BtaINT0002282 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8M2]
Coordinates
chr21:35206568-35207162:-
Coord C1 exon
chr21:35207027-35207162
Coord A exon
chr21:35206826-35207026
Coord C2 exon
chr21:35206568-35206825
Length
201 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
CTCTTGTCTCTTCCCATCAGCTG
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTCAATCAATGTCACCCTGGGGGCCCACAACATCAAACAGCAGGAGAGGACCCAACAGGTCATCCAGGTGAAAAGAGCCATCCACCACCCAGACTATAATCCTAAGACCTTCTCCAACGACATCATGTTACTGCAG
Seq A exon
GCAAGGAAAACTCCCCACTGGCCCTGCCCTCCTGGAATTATATCATTGCCTCCCCAGGATCTCCTTCCTCTTTCTTCCTTCCCATCCTGGCCGCCTGACCAGTCTCAGGGGGATAGGTGAGAGATGGGTCCATGCAGCCTCATCCTGGCATCCAGGCCAGAGGACCACCGGCTGAGCCAGACTCTTGTCTCTTCCCATCAG
Seq C2 exon
CTGGAGAGAAAGGCCAAGCAGACATCAGCTGTGAAGCCCCTTAGTCTGCCCAAGGCCAAGGCCCAGGTGAAGCCAGGAGAAGTGTGCAGTCTGGCCGGCTGGGGGAAGGTGGCCCTGGGCACTCCAGCCACCACCCTGCAGGAGGTAGAGCTGACGGTTCAGGAGGATCGGGTGTGTGAATCACTCAACCCCAGGAACTACAGTCGGGCCACCCAGATTTGTGTCGGGGACCCAAGGAAGGTGAAAACCGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010828:ENSBTAT00000014364:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAACATCAAACAGCAG
R:
ATTCACACACCCGATCCTCCT
Band lengths:
295-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]