BtaINT0002512 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21755757-21758021:+
Coord C1 exon
chr12:21755757-21755806
Coord A exon
chr12:21755807-21757859
Coord C2 exon
chr12:21757860-21758021
Length
2053 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AGTCTATTTGTTTGTTATAGAAT
3' ss Score
7.08
Exon sequences
Seq C1 exon
AGCAAGATAAAGAGAATTGTGTACTTAATTATATCATCCTTCACTTTCAG
Seq A exon
GTATGTGAGACTCTAGAGATGGAAGTAATTAAAGATGTATTACATTTAATATCAATATTTTTTATGGCAAAAGATCTGGGAGGGGGAAAGGCACCTCCACTGTCAATATGTTGCTAAATACCTTTGTGCCCCATTTAATGCAATCTAATTTATCTTGGAATTTTAATTGAAGTGGAATATTAAGAATTGCAAAAGAAATGGTATTTACCCAAGTCTAATAGTAATGCGTTAACATGTCTTTTTCTACCTGTAAAAGTCAAAATAATGAAACATGCATTTCAAAATTCTATAATTATAAGGAAAGTGTTTTAGTAAATATTCATCTAGAATTACTCCTTAATTCTGGATTCATTTTACTTAGATGGTTCATTTCTACATGATAGTAAGATTTCATACTGTGTTACAGATTCACACAACATACTTACTTCCTTTTAAAGCAATAATATTTTAATTTGCATTACAATTGTGAAAAAGTGCCTTGGAGATTATCTTCACAGGTTATACAAATAGTATAATCAACTTATGGACAATGGATTTAGCATATATAAGAGAAAGGCTTAGGAGGTACTTTATAATTCAATCATGTATGTATTTATGGAATTGAATTCCTTCTTACATGCCCAGAACCATCCATTAACATGTAATCAACAGGCTCCTCTATGTATTTCTCCAAGCAAGAATACTAGAGTGGGTAGCCATTCCCTTCTCCATGGGGTCTTCCCAACTCAGGGGCTGAACTTGAGTCTCCTGTATTGCAGGCAGATTTCTTGACCACTGAGCCAGTGTAGTTTCCCTGTTTTGTCTTGGAGTGTCAGTCTGATGTGTCTATTATAAAAGGGCACAATACCATGAAGTGGTTTAGTGGAAATTTATTTTCCTAATGACTGCTTCTATTGAGTGAAAACAGAGTCATTTATTTATTTTTTGAAAATGGAAATAACGTTTTTATTTTTTTTTAACTTTTTATTTTGTGCTGGAGTATGGCTGATTAGGGCTTCCAAAGTGGCACAGGTGGTAAAGAACACGCCTACCAAGCCAGGAGATGTAAGAGACTAAGGTTCCATCCCTGGGTCGGGAAGATCTCTAGAGGAGGGCATGGTAGCCCACTCCAGTATTCTTGCCTGGAGAATCCTATGGACCGAGGAGCCTGGCAGGCTACAGTCTGCAGCATAGCACAGAGTTGGACATGACTGAGGTGACTTAGCATACACACATAGCCAATTAACAATGATGCATTTTGTATTGGGGTATAACCAATTAACAATTTCGTGATAGTTTCAGGTGAACAGTGAAGGGACTCAGTCATACACATACATGTATCCATTCTCCCCCAAACTCCCCTCGCATCCAAGCTGCCACATAACATTGAGCAGAGTTCCCTGTGCTGTACAGTAGGTCCTTGTTGGTTATGCATTTTAAACATAGCAGTGTGTATGTATCCATCCCAAACTCCCTAACTCTCCCTTTCCCCCATCCTCCCCCCTTAGTTCAGTTCAGTTCAGTTGCTCAGTCATGTCCAACTCTTTGCGACCCCATGGACTGTAGCACAGCAGACTTCCCTGTCCATCACCAACTCCCGGAACTTGCTCACAGTCATGTTCATCCAGTCAGTGATGCCACCCAGCCGTCTCATCCTCTGTCATCCCCTTCTCCTCCTGGCTTCAATCTTTCCCAGCATCAGGGCCTTTTCCAATGAATTGGTTCTTTGCATCGGGTGGCCGAAGTATTGGAATTTCCGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCATTTAGGATGGACTAGTTGGATCTCCTTGCAGTCCAAGGGACTGTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAAAAGCATCCTTCCCCCTAGGCAACCATAACTTCATTCAGAGTAATTTGAGACTCTAAAGCAGAGCATTTCTCCCTACTACCGAACAGTTTAATTTGGAATAATAACATTTTGATATCAGATCATTGGGCTGAAATTAGTCTGTGGGTGTAAAAACCACTTTATCCTTATTCAGTCTATTTGTTTGTTATAG
Seq C2 exon
AATATTTGCAATCTTGCTGATCTTTCTGGACATGGCCCTCATCATCAAAGATGTAATTTTCCTTAGTGGCACGACACAGATTTCTTTGGAATCTCGTTCAGTTTCTTTTGTTATTGCTTTTTTTTTTTTCATGGATGTTTCTCTTCGAGTGTTTATAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654:ENSBTAT00000035777:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development