HsaINT0171603 @ hg19
Intron Retention
Gene
ENSG00000198384 | TPTE2P3
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 [Source:HGNC Symbol;Acc:27345]
Coordinates
chr13:53095194-53096930:+
Coord C1 exon
chr13:53095194-53095244
Coord A exon
chr13:53095245-53096768
Coord C2 exon
chr13:53096769-53096930
Length
1524 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
CATTTATTTATTTGTTGTAGAAT
3' ss Score
7.91
Exon sequences
Seq C1 exon
CAGCAAGATTAAGAAAATTGTTCATTCAATTGTGTCATCCTTTGCAGTTGG
Seq A exon
GTATGTGAGACATAGAAAACACCATGTATTAAATATACGTGAGACTTAATGCATAAAAAACACCACGTATTAAATATATCTGAGACTTGGCCAGGTGTGGTAGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCTAACACGGTGAAACCCCGTCTCTATTAAAAATAAAAAAATTAGCCAGACATGATGGCGAGTGCCTGCAATGCCAGCTGCTCGGGAGGCCTAGGTGGAAGAATCGCTTGAACCTGGGAGGCGGAGATTGGAGTGAGCTGAGATCACACTATTGCACTGCAGCCCAGGTGACAGAGCGATATATATATATATATCACTCTTTCAATGAGAAAGACTGAAATAAAAAACAAAACCAAAAAGCATTTCCTGTCCATCGGTTTCTAAGTAGCCATGTGCCCCATCTAATGTAATCTAATTTATCATGGAAATTTGGTTTAAGCTGGACTTTAAGACTTGCAAAGAAACGGCTTTTGTATAAGATTAATAGTAACATATTAATATTATTTTTCTTCCATCTGCACAAGTAAAGTTAATGAAAATCGAATGTTAAAATTCTATAATTATAAGTAAAGTGTTTTATTAAGTACCTTATACATCTAGAATTACTCTTTAATTCTGGAAACAATTTACTTAGACTCTTCTCTACGTAAGAGTAAGATTTCATACTATGATATAGATTTACGCAATATGATATAGATTTATGCAATATAATTGTTTCCTTTTGAATTAATGATATTTTAACTTGAGCTGCAACTTTTTGAAAAGTACTTTGAAGATGAATTCATCTTCATAGATTAAGCAAATAGTATAATCAATTTATGGGGAATGTATTTAGAATATGTAACAGCAAGTTTCAGGAGGTACCTTAGAGTTCAATACTATAAATATTTATGGAATTGAATTCTTTCTCATGTACCCATCACTGTACTAGAATCGCCCATAAATATGTAATCATGTACTTGCTGAAAATGTCACTGACAAAAAAAATCTTGGTCTTTTAAGAGCTTATGTTACTCATGCTTTCATTTGGTTTTTATTAATAAATTCTTAAGAATTATCCAGATTAATAAGATTTTATTTTTTATGAGAAATGGGTGTAAACTTCTTATGAAATTCTCAAATTTTAAGAAGAGTTTACAAACAGACACAGGCAATTTTAGTTCAGTTTCACTTTTCTCTCTTGAGGTGTTAGTCTGATGGATCTGCTATAAAAGGGCATGATAACGTCTTGTGAAGTGGTTTGGTGGGAATTTTATTTATTAAGAACTGCTTCTATTGGGTGAAAACAGTGATTTTTCTGAGATTCTATGACATTACAGTTTTTCCTGCCACTGGGCAGTTTAATACTAAATAATAACATTTTGGTACCTGATTATTGGCCTAAATATAGTATAACTATAGGGACAAAAGCCCCTTTATCTTTGCTGTTACTTACTTATTTATTCATTTATTTATTTGTTGTAG
Seq C2 exon
AATATTTGGAGTTTTCCTGATCTTGTTGGATGTGGCTCTGATCTTTGCTGACCTAATTTTCACTGATAGCAAAGTTTATATTCCTTTGGAGTATCGTTCTATTTCTCTAGCTATTGCTTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198384-TPTE2P3:NR_002793:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGTTCATTCAATTGTGTCATCCT
R:
CCTTCTACAAATACTCGAAGAAGAAC
Band lengths:
198-1722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)