BtaINT0002559 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MX34]
Coordinates
chr18:60071829-60072249:-
Coord C1 exon
chr18:60072191-60072249
Coord A exon
chr18:60072152-60072190
Coord C2 exon
chr18:60071829-60072151
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATTGTAACT
5' ss Score
2.87
3' ss Seq
TGGTTCTTTATGTCTTGTAGATA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GATGAATATGGCTTTTGGTATGAAAGTCATGTGTTTGACAAATAATTTATTTATGAATT
Seq A exon
GTAACTAATAGAATACCTGTGGTTCTTTATGTCTTGTAG
Seq C2 exon
ATATGTCTCAGATAGATATGATCAAGAAATTACAGGCAAAAGCAGACAGTGGTAAAGGGGAAATTTTTCAAAGAGTGATGTTTGAAAGAGCTGAAAGCCTTGAAAGCAAAGATTTTCACCTCAGGAAGATGCAGGAAAATATAGATGACTTTGACTGTCTGCGGACAGATGATGAAAGAAATGACAAAGGATTGTCTACATCCCATAACAAAAACCTCACTGATGGAAGAGATCATCATAGTAGAAGTGATGCAGAAAATGGAACTTTTGAAAGGCACGGATCAAGCTTTCAGGATGAATCGCAGATGATGCAATCTGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011844:ENSBTAT00000028697:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.454
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTTGGTATGAAAGTCATGTG
R:
TCCCCTTTACCACTGTCTGCT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development