HsaINT0187169 @ hg19
Intron Retention
Gene
ENSG00000170954 | ZNF415
Description
zinc finger protein 415 [Source:HGNC Symbol;Acc:20636]
Coordinates
chr19:53611132-53618560:-
Coord C1 exon
chr19:53618463-53618560
Coord A exon
chr19:53613162-53618462
Coord C2 exon
chr19:53611132-53613161
Length
5301 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATGGTTTTCATTTCTTATAGATC
3' ss Score
9
Exon sequences
Seq C1 exon
GCTGGAGTGCAATGGTGCAATCTCGGCTCACTGCAACCTTCGCCTCCCGGATTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG
Seq A exon
GTATGCACCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCGTCTCGGCCTCCCAGAGTGCTGGGATTACAGGCTTGAGCTGCCGCGCCCGGCCGGTCTCTCCTGTTCTTGATGCCACCTGATGCTCAGTTCGCTCTCCATATAGATCAGAGGGGAGGCCTCCACAGTCCTGATGCCTGGAGCTATCCATGCTCCACCCCATTTCTGGTGCTTGGAAGACCTGCCCACAAGATGGGAAACACTGGCTGCTCCTTCTTTGCATCTGAGGCCCCGGGGAGCTGCAAGGAGCTGTCTCAAGCCCTTTCTACCTGTTGTGGTCCCTCAGCCATTTCTTCTGTTCTGCTTTTGCCACAGTTCGTGGGTGTGTGGACCAGGGGAGGGAGTTGGTTCTTCTGGGATTGTTACTCTGCAGAACTGTAAGAACAGTTGACAGGTCTTCACTGGGATCCCCCGTCCTACACAGGGAGTACGTCTTAGTCTTTCAGGCTCTTAGCTTAGGATCCCTCTGTAGGCAGAGCAGACAATCCCATCTCAAGATCTTTCAAAATCTAGCCTCATATGTTGTATTTTTCTCTCTTTTCCGTTGGTCTCACTGCTATATGAATGTGGAAAAACCTTGGCTCTTCCTGATTTTGTTTTCTCTTAAGTTTGCATGATTTTTCCTCTGAAAACCAACTTTTGACCAGGTGCGGTGGCTCACGCCTGTAATTCCAGCACTCTGGGTGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCAAGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAGTTAGCCAGGTGTGGTGGCATGCACCTGTAATCCCAGCTACTCAGGAGGCCGAGGCAGGAGAATCACATGACCCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATGGCACCGCTGCACTACAGCCTGAGTAACAGAGTGAGACTCCGTTTCAAAAAAAAACAAACCCAGCTTTTGATATACACACTCCTGGAGTCTGTCATTTCTCTATTCCTGCTATGATAACCAACCTATAGGTTATGCATACCTTCTCCTGGAGTCTCTTGTGGAGGGTGTTTATATGATAACAGAAAATTTATGAGGGAAAACTCTTTAATATAATTGAATAGCATCCTGCTACATGTAGAGATGCCCCTTAAAGCGTTCAGCAGAATTGTCAGCATGGCTCAGGATATAAGATACAAAATATCAGGCGAGCCTGACTGACAAGTGTGTCCAGATGTCCTTCTAGTTTTGAGGAGCCTCACAAAAGTGTACCTGGAGGGCACTGTGACAGCGCTGGACACATAAACTAATGATCATCTCCCCTAAGCCAGCAGTTGGTGTGGGAGTTTCTCCTAGCGATGACATTGTTCAAGTTCACAGCATCATATGTATGAGGCTCTTGACTAAACTATTGTTCACACCACATTTGTTCATTTTCCATCCTGTGTGCACCATTGTTCATTCTCATCAACAAACCTTTGTTCAGCCTGGGTTCAATTTGTTGTAGGTTCAAACCTCCCTCTTGTGGAGGGAGCTTGTGAAGCTGAATGATGCCTTGGTTTTTTTTCGTTTGTTCTTTTTTTGCTTTACACTGCTGTAATGCCTCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGACTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGCGTGCGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAATGCCTCGGTTTTTAAAGTCCAGTGTCATTTGTTTAAGCCACTACTAGTTTCATCTTGTACATTTACATGTGGTATAAATGAACATCTTTTTCATTTAGTCGTAAATTCTGTATTTTTTATGATACTTTTTTTTTTTTTAAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAATACAATGGCACAATCTCAGCTCACCGCAACCTCCACCTCCCAGGTTCAAGCGATGCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTGTATTTTTAGTAGAGACAGAGTTTCTCCATGTTGGTCAGGCTGGTCTTGAATTCTCGACCTCATGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCCCAAGGTCAGAATTGTAACTGTCCTAGTGGAATTATATCCCACACATGTGCATGCAGATTTTCCTCTGACATGCCCATTACTCCCTCTCCTGTGCTCTTGCCCTTCCTCTCTCCTATCCTCACATGATACCTTGATCTGCATGGAATATACTGTTGCTTTTTAGCATATTGGTTTTGTATTCCTGAAAACCCCAATTGCCACAGGACTTCCTCACCCTCCACACTACTCTCACTATGCAAGACAAGACACTACTCAACCGCTTTATAAGTCAGGATCTGCCTAAATCAGTATGTGTAGGAAGTGATGACTCAGATACCATTATCCATGAGAGCTGACTGACTAGATGCATTGGTGGTGTAGTGGTGAGCATAGCTGCCTTCCATGAGAGCTGACTGAATAACACTATTATCAACACAGCCCAGCTCTTGTAGCTCCTTTTCTTCATATGCTCCTCGCCTGGGTGCATTCTTGCTGTGACTGATAGTTTTCCACACTGCACATGTCCACCCAGGTTTTCCACACTGCCTGTGGGTGGACATGTGCTTAAAAACACGTCTGATGGCCCGGCGTGGTTGCTCACGCCTGTAATCCGAGTACTTTTGGAGGCTGAGGTGGGCGGATCACTTGAGGTCAGGAGTTCGAAACCAGCCTGGCCAACATGGTTAAACCCCTTCTCTACTAAAAATACAAAAAAAGTAGCCGGGCATGGTGGCAGGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGCCAAGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACACCACTGCACCCCAGCCTGGGCAAAAGAGCGAGACTGTGTCTCCAAAAATAAAAATAAAAAAAAGTCTGAGCCTGCTGGCCCAGGATTTAGTCTTGTTTTTCTCTCTTATTTTCTGTGAAAATTTAGGTTAGATACATGAATACCATGGGCCTAATGTGTTTATTTGAAAAATAATAACAATTTACTTGAAAGTTTTTAAAACAAGGTGGTGGTGTGTGATTACTTGGAATATTGCATGTCTTACAGTAAAGTCCCAAAGTTTGTTTAATAAGATTGATCAGCCTTCTGTGATGATTGTGATGAGATTGTCCTTTTTCTGTCTTATATAACTCATCGTGCCATAAGAAATATCATAGGCGGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGTGGTGGGCAGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACATACTGAAACCCCATCTCTACTAAAAATATAAAAATTAGCCAGGCATGGTGGTAGGCACCTGTAATCCCAGCTACTTGGGAGACTGAGGCAGGAGAATCGCTTGAACCCAGGAAGCAGAGGTTGCAGTTAGCCGAGATTGCGCCATTGTACTCCAGCCTGGGTGACAAGAGAAACTGGGTCTCAAAAAAAAAAAAAAAAAAAAAGAAATATCATAGGCTAGGAGAACTAAACCACAGAAATTTATATCTCCCAGACCTGGAAGCTGGGAAGTCAAAATTAAGGAGCCAGGTGAATCAGTTCCTGGTACTGGCTCGCTGACTGTCCCACATGATGGAAAGGGCAAGAGAAAACAAGCTCTTATGTTTTGTCCTGTAAGGGCATTAATCCTATTTTTGACTAGTCCAACCTCATGACCTAATTATATCCCAAACGCGCCATCTGCAACAACATCACACTGGAGGATAGGACCTTAGCATACGAATTTTGGCCAACATATTCAGACCGTAGAGACTGCATTATATTTTGTTTGATTTTATTTTCAATTCGTTTTAAACATTGTGTTCTCTGATTTCAGTTAATAAATTTTCCAAGTACAAACTCTTATGTATATTGTGTGGCTGATGAACTAGGTCATGAAAGGGCAATGCATATGTAGGGAATTGCGTTATTGACTGGCTGTTTGTTACATAAGTGCAGGTGTGAAGTCATAATTGTGATTTCTGACTTTGTTCTTCAATTCTTCTTTATAATGCTATGTGTTTACCTGACCTCATGCATCAAATGTCAGAGATCTTAACATATATTCCAGTTCACAGGTTGTGTGCTGGTTCTGAAATAGTTCTTGCTTTTTTCTTAGGAGAGAATCATTTACAGGCTATAACTTTGTACAAGTGTAGTTACTAGTTTTTGGTTTGCATTTTTATCATGGGTTACTACAGTGTTTTATTAATTAATTGTTATGGTTTACAGATGATGGGTTTTTAGTAAGTTTCATGCAATATAACTGACATGCATCACTCATTAATGTCAAAAATGCCTGGTCTAGGTGGGTACAGATATTTTCATAACAGGTATTCAGAAAAATTAGCTATTTTTAACAGTGTTTTATTAGTTTTTGTCTCGTTTTCTCAGTGCTATTACTGTTTTGCAATTCAGAATTATCATTTATGTATCTTACTTATTCCGTAAGTTTGTTGTGGCTTAGTTACCATTATGATATATTGTGTAGTACTTTTTTCATTTATATGGGCACAGTAAATATGCTGTGGCTAGGTAAAATGTAATATTTATTTCAATAATGAGACAGCCATGTATTTTCTGCCAATTGGTGTGTACTTTGCTGTCAAGGTGAAAAAATACTCCTTTCAGGGCTAACGTAGGTTTGTACAATGTGTTTTGGTCATAGGATGTTTGAATCTGTCCTTCCCTAGAATTTATTTGAATGCCATGTAATCACCCTTTTTTTACTAAAGAATGTGATTCCTTTGTGTTCGTAAAAATTAAAGATCATGATTGGGAAGTTTTATAACTCTGTTGTATATAAATGTTGCTTTTTGTGTAATTCTGTTATTCAGTATGAAATATTTATATACTGTCTCTAATTAATTGGAAACCTATGGTTTTCATTTCTTATAG
Seq C2 exon
ATCTGTCTCGTAACTGTGTAATCAAGGAACTAGCACCACAACAGGAAGGTAACCCAGGAGAAGTATTCCACACAGTGACATTGGAACAACATGAAAAACATGACATTGAAGAGTTTTGCTTCAGGGAAATCAAGAAAAAAATACACGACTTTGACTGTCAGTGGAGAGATGATGAAAGAAATTGCAACAAAGTGACTACGGCCCCAAAAGAAAATCTTACTTGTAGGAGAGACCAACGCGATAGAAGAGGTATAGGAAACAAGTCTATTAAACATCAGCTTGGATTAAGCTTTCTACCACATCCCCATGAACTGCAGCAGTTTCAAGCTGAAGGGAAAATTTATGAATGTAACCATGTTGAGAAGTCTGTCAACCATGGTTCCTCAGTTTCACCACCCCAAATAATTTCTTCTACCATCAAAACCCATGTTTCTAATAAATATGGGACTGATTTCATCTGTTCTTCATTACTCACACAAGAACAGAAATCATGCATTAGGGAAAAACCTTACAGATATATTGAGTGCGACAAAGCCTTGAATCATGGCTCACACATGACTGTACGTCAGGTAAGTCATTCTGGAGAGAAAGGATATAAATGTGATCTGTGTGGCAAGGTCTTTAGTCAAAAATCAAACCTTGCGCGTCATTGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAATGAATGTGACAGAAGTTTCAGTCGCAACTCATGCCTTGCACTACATCGGAGAGTTCACACTGGAGAGAAACCTTACAAATGTTATGAGTGTGACAAGGTCTTCAGTCGAAATTCATGCCTTGCACTACATCAGAAAACTCATATTGGAGAGAAACCTTACACATGTAAAGAGTGTGGCAAAGCCTTTAGTGTGAGGTCAACACTTACCAACCATCAGGTAATTCATAGTGGCAAGAAACCTTACAAATGCAATGAATGTGGCAAGGTGTTCAGTCAGACTTCAAGCCTTGCAACTCATCAGAGAATTCACACTGGGGAGAAACCATACAAGTGTAATGAATGTGGTAAAGTCTTCAGTCAGACTTCAAGCCTTGCAAGGCATTGGAGAATTCATACTGGAGAGAAACCTTACAAATGCAATGAATGTGGTAAGGTTTTCAGTTACAATTCACACCTTGCGAGTCATCGGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGGAAAGCCTTTAGTGTGCATTCGAACTTAACTACCCATCAGGTCATCCATACTGGAGAGAAGCCTTACAAATGTAATCAATGTGGCAAAGGCTTCAGTGTGCATTCAAGCCTAACTACCCATCAGGTCATCCATACTGGAGAAAAACCTTACAAATGTAATGAGTGTGGCAAATCCTTTAGTGTGCGCCCAAACCTCACTAGACATCAGATAATCCATACTGGAAAGAAACCTTACAAATGTAGTGATTGTGGGAAGTCCTTTAGTGTGCGCCCAAACCTCTTCAGACATCAAATTATCCATACTAAGGAGAAACCTTATAAAAGAAATTAATATGGCAAGGTCTTCAGTCAAAGTTTAAATCCTGTGAGTCATCAAAGAATTTATATCAGAGAGAAACCATACAAGTATAATAAATGTGGCAAGGTTTTCAGTCACAATTCACTCCTACACAGCATCAGAGAATTTCATTCTTGAGAGAATCCTTACGAGTACAGCAAACCCTTCATCACAAGTTCAAGCATTCATTGACATCAGAGTCCATGCTAAAGAGAAATCATATACACCTAACTGTGTGGCAGAGGCTTCATTTAGGTCTCACAACTCACTAGACATCAAAATGTGTAAACATCTTTGTATATTTTGTGCATGTTGAAGCTATTAACCAAGGATCAAAACTGTAACACATCCAAGGATTTATGTGAGGAATAATTCAGTCTAGTTGTGCTGATAAACTTTTCATATTACACATTGTAGAACAAATGCAAGCCCAAATATGTTAAAACTCACACAACATGATATATATTAAAGGTTGCAGGATGTTTGAAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170954-ZNF415:NR_028343:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=8.0),PF0013017=C1_1=WD(100=19.6),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF0013017=C1_1=WD(100=15.6),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF0013017=C1_1=WD(100=16.6),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF0013017=C1_1=WD(100=15.6),PF134651=zf-H2C2_2=WD(100=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)