BtaINT0002805 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSL7]
Coordinates
chr17:45059275-45061078:+
Coord C1 exon
chr17:45059275-45059370
Coord A exon
chr17:45059371-45060763
Coord C2 exon
chr17:45060764-45061078
Length
1393 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTTTTTTTTTCCTTCATAGATC
3' ss Score
12.22
Exon sequences
Seq C1 exon
GGTATGAAGTTATGAAACCTGGTGTCATCCTTAAATTGGAGCAAGGAGAAGACCCATGGACAGGAGATGGAGAAATTCCAAGTTCAGGCTCAATAG
Seq A exon
GTGAGTGTATGAAGACCAGACAGAGGAGAGAAGGTGGAAGTCATTCTCAGCAGGGTGGTGGTTGGCATCCTTGAAATGTGCCTTAGAGGGCTCTGTTCAAAATCTCAAACCCTTAGCGGTGATTCAGGACAGTTAACATGAGCTACTGAAGTGAATCACATTACATGTGGCTTCTTTGCTCGTAGCTTGAAGTGAAATGTTTCCAGCTGGTTTGGCCCATGACGTTATTCCCAGTCTTTCACATCTGGGACTTTGACTTCTTGTTAGGTATTCTGTCTCCTGATGTGGTTAATCTCCTTTTGTCCTCCCTTCTCTCTGTGGTCAAAGACACCTGTGCTTGACCATCAGGGCTTTATTTTTCCTCGCTTTGGGTGTCTCTGATGTGAAACCCTCTCTGTTCAGCCTTATTATGTCAGAAAGTGGATTATCATTCCTCCCAAACTGTTGGTCCACTTCTCCCCTAGTTGGTCAAGTTCTGTTGTGCTTTTTCTGTAGCTTAGACATGGAGTATATGGAATTACCTCTTTTCTACCTTTTTTTTTTTACTAAGTTTTTTACCTTTGGAAAACATCTTTTGAAAGACTTCTCTATTCCCACTTAAAACTAAGGCTAGTCTGAACTTCCCAAATTACTAGCTAGTGTAGATCCCAGTTCTCACCTTCTTTTGTGAGTTACGTGGCACCACCAAGCATCCAGCACTGCTCTGATCAGCTGGGCCCTCCTCCTCGTTTCCTATTGTGTGACACTGACTTAATTCAAGGTGCCTCAAAAGCAGACCCTGAGATACTTAGTGGGACTGTGATCTCCACAGTGTTAGTGGGAGAAGGGGAAGTGAGATGGGGTGAGAGAGGAATGCATGAACAGTGTGCTTCTGGGAACCCTCTGAGGAACCAGAAAGCTAGTACCACACTCTGCCTCCTGTCCCTCAGTGACTGAGTATTGCCCCAGGGAATATTAGGGCTCCAGAGTATCTGGCATCCCTGCACATGGCCCCAAAATGCACTTGCAGCCCATCTCTCCATCTCATGGTGGAGCGATGTGGGCACGCTGGTTGGGCCCCACAATTGGCCTGAGCTGCAGTGTCCTCTGAGTGTGGCTGAAGGGGGGCAGATGACACTGAGGACCTGTGGAGTGAGCCCATGTAGCCTGTTCAGCAGTTACTCCCTTTGCTCCAAGTTGGTGGTCAGTTTCATTTAAACTTAATCTACTGTCTGCTTTCTGTTCTTGTTTACAGTGTTTAAAGTGTTTTTCAATACCTAGAGGTTAGACATTGCAGTCATACTAGGAAACTAAACATTAAAAGGCATTAGTTCCCTCAAATAGCATTTCTAGGTTTTTATTCAATAAACACGACTATGGAAAGACTTATGGGATTTTTTTTTTTCCTTCATAG
Seq C2 exon
ATCAAGTCTTTCAAGTAAATGGTCACATGACTTGGCACAAGGATAACAAGAAGTTTAAAAATATGAAACAAGATCATGAATGTGATGCACTTGGAAAAAAGTTTAATCTGAGCATGAACTTTATTCCTTTAAGGAAATCAAACAAAGAAGGTGACATAGATGGATTAATTTTAAAACATCATTTAGATTTTCTTATTCCGAAAGCAAACTATGGAAGAATGGAACCAGCTGACTTAAACATATTTGATAAATTATTTCTCCATACCAAGACTGAGGAAACTGATACTTGGTTAAAATACTATGCATGTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013001:ENSBTAT00000029730:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGCAAGGAGAAGACCCA
R:
CAGTTTCCTCAGTCTTGGTATGGA
Band lengths:
343-1736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development