Special

MmuINT0179538 @ mm9

Intron Retention

Gene
ENSMUSG00000023284 | Zfp605
Description
zinc finger protein 605 [Source:MGI Symbol;Acc:MGI:2444933]
Coordinates
chr5:110553372-110558813:+
Coord C1 exon
chr5:110553372-110553464
Coord A exon
chr5:110553465-110556265
Coord C2 exon
chr5:110556266-110558813
Length
2801 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATTTCTTTTTTTCTTTTTAGAGA
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTAATCAAACCACCAAACCTGATGTAACTTTCAAGCTAGATCAGCAAGAGTCACGGATAATGGATGAAGAATGCCTAAGTCAAAACTTTTTAG
Seq A exon
GTAAGAAACCACAAACATTAGGAAGGGTGAAAATTAAGCCTTAAAAGTTTAAGGAACAGGAGAGTACATTTGAAGTGTTTAAGGAACAGGTGAGAACATTTGAAGTGTTGTTCATAAATTCTATTTAAAGTTCCCAAGTCTTGAGACATCTATGGTGGCAAAGGTTCCAGGGCAGAAAATATCTTTGTGATTAAATATTTCAGAGTATTAGGAGTTGTGGTAGTAGGGTCAGGGGAGAAAAGAGGGCTGGCTATAAAGGCCTAGGAATCATGATAAAATTTTGAATCTGTCAGAATTTTTAAAGATGACTAGATGCTGGACTGGAAGTAGGACTATTATTTTGGAGAAGGAGGTAGAATTAAGGATTCCGTAGTCCACCGTGGGACAGAAACAAAGTGCAGAAATTACACATGTGCCTCACCCAATATCAGCAATGGTGTAATTTAGTCAAATCAGCTTAAATCACTTTCAGTTTTCTTATATAGATTCTCAGTCTACAGCCCTGGGTGGCTTGAAACTCACTGTGTAGCTCAGGTTAGACTGGTATACATGGTACTTTTCCTACCTAGCCTTTAATTGCTGGGATCATAGGTATACGCTATTATGCCTAGTTTAAAGGTTTTTGTTTTTGTTTTCTAACACAATTTTATTCCTAAACCTTTAAATATATAAATGAATTGGTTTTGTTTGTTTATTTGGTTGGTTGGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACAATGCCTGGCTCAATTGTTTTATTATTATTTAATATAATTCATTAATTTAGATTAAATAAAGTTTATATACACACGGGGTTTGCAGTAATAGGGATATATATATATATACACATATATATGCACACATATATATGTATATATACGTATATATGTATATATACGTATATATGTATATATACGTGTATATATGTATATGTATACATATACATATGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATGTTTATAGGTTCAATTATTGGCCCAATTAAAAAGGGATAAATGTCAGACTTTGATAATAGTAAACTTGAGAGGCTGAGACAGAAGGGGCACCAAAAGTCTAAGCTCAACCTGGCCTACAGAGCAGGTGTTGAGATGGATCAGTCAATAAAGGCACTTGCAACCAACATGACACCCTTGTTGAACCCCACGTGGTAGACAGAAAGAACTGACTCCTCAAGTTGCCCTTTGATTTTCAAGAATGCATGTGTGCTTGAGCGTGCACACACATATACATAAAAAGATGTAGTACAAATATATATATATATACATATATATATATATTGATTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGCATGTGCCACCACCGCCTGGCCAGAAAGCTTCTTTTAAGAGAGAGAGAGAGAGAGAGATTTATTTTATGTATGTGAGTACACTGTCGCTGTCTTCAGACACTCCAGAAAAGGCATCTGATCCCATTGCAGATGGTTGTGAGCCACCATGTGATTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTTTTAACCACTGAGCCATCTCTCCAGTCTCTCAGTTGATGATCTTAAGGGCGATTATTTAAAGGGATTTTTTTTCTCATTTTTATTTTGTGTGTGTGTGTGTTTTCTTCTTCCACTGTGTGGGTTCTGGGAAACGAACTTAGGCCATCATGGTTGACAGCAGATACCTTTACTCAGTAAGTCATCTTGCTGGCTCTGAGATTGTTTCCTTCCTTCATTGATTGGTTGATTGGTTGACTGATTGAGATAGGATCTCACTGTGTATCCTGGAACTTGAGAGATCCACCTGCCTTTGCAGTCCAAGGTCTAGGAATAAAACATGTGCCAACTCCAGGCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAAGTAGAGGCAGGTGGATTTCTGAGTTTGAGGGCAGCCTGGGCTACAGAGGGAGTTCCAGGACAGCCAGGTCTACACAGAGAAACCCTTTGCCAAAAACATTTTTTTAGAAAAACAGTGAATCACCATTACCAGCTACTGCGGGTTTTCATAATGTAATTATGGTATAGAAAATTAGTGCTTCTCATCTTTCAGATATAAAGTTTGTATCCTGTACTTGCTCTACATTTTGGCCGATTTTTCATTCAAAAACAGAGTGTGTTTATAATGTTTATATTTGTTTATTCTCAGTTTTCAGTATATTTTGTTTGAGTAATTACCTGCCTTCTATAATCTTTTGCATCTGAGCCTGAACATATACTTGAAAATCATAGGTTATTGCATATTAATAACACTTGTAATTCAAAGTTTAATTTTCATGTTTCATTATCCAAGACAAATGCCTTGAGTTCTAGTATTTATGAGATTTAAGTCAGGAGGAATTTTTAGTTTGAGGTCTTTGTGAGCTACATAATAAAACTGTTTCCAAAACAAACAAACAGAAAACCAATTAGTTTTAATTAGTATATATTATTTGAGAGCTTACCTTCTTTCCAGAATAGTAGGCTCTATTTTAGAAGTTTTATTTTTAAATACAATCATTGAAGAATTTATATAATGTGGTACATTTCTTTTTTTCTTTTTAG
Seq C2 exon
AGATCTGGCTAGACAGTTATTCTGAACTATGGCTTCAAGATGAACAAGACAAGCCTAAAAGGATGGAGAGAGGCAATGGAGATAATGTTTTGGAGGAAGTATGTCACTCAAGCATGAACTCTGTTTATTTAGAAATGAGATTCCATATATGTGGTACATGTGGAAAGAATCTAAAAAGTCCTTTAAATTTTTTCATTCCAAAAGGTAACCGTGTAAGAAAAAAAAGTAAAGTCAGTAAGAAATTATTATTTTATCTAAAATTTGACAAACCCTACAGTAAGAGAAAATGCCATGATTGTAATAAGTACAGAAAAGCAAACAGTAATGAGTCACAGCTCGTTACAAAGCAAAGGACACATTCAGGAATCTTTTTATGTATGGAATGTGGTAGAATTTTTAACAAGAAATCACAGCTTATTGTACACCAGAGAAATCACACAGAAGAGAAGCCCTGTCAGTGCAATGGGTATGGGAAAACTTTTGCACAAAAGTCCCAGCTTGCTATCCACCAAAAGACTCACTCAGGAGAAGAACCAGAACGTCAGAAAGCTTTCGGCGGGAAGTCCCTGGGCCTTCAGCAGCAGAGAACTCACACTGGACAGAAGCCCTATGCACGTGGAAAAACCTACAGCAGGAAACCAACGCAAAACAGGCCGGCGATGAGTCACGCAGTACATAAACCTTACCGTTGCGGTGATTGTGGGGAAGTTTTCTCTCAGAAATTGAAACTTATCATTCATCGAAGCACACATCCAGGAGAAAAACCCTATAAATGTAGTGAGTGTAGAAAAGCTTTCTTTTGGAATTCACAACTCATTACTCATCGGAGGTCACATAGAGGGAAGAAACCTTATGTATGCAGTGAATGTGAGAAAGCCTTCAGGAGGAACTCGCTTCTCATTAGGCATCAAAGGATTCACACGGGAGAGAAACCACATAGAAGCAGGGAATGTGGTGAGGCCTTCATCGGAAAACCACAACTTGCTAAACATCACATGACCCATACAGGAGAGAAGAAATGTTATGGCTTTGAAGAAGTCTTTTTCAAGAAGTCAAAGCTAATGAGACATCAAAAAAGTCACTTAGGGGAAAAACCGAATAGGTGTGCTGAGTTTGGAAAAATATTCCCTGAAAAGTCACAGCTCCTGACACATCAAAAAAGCCACTCAGGAGAGAGACCATATAGGTGTGCTGAGTGTGGAAAAACATTCCCTGGAAGGTCATCGCTCCTGTCACATCAAAGAACTCACACTGGGGAGAAACCTTACAAATGCAATCTGTGTGGAAGGGCCTTCTCCCAGAGGTCAAGCATAATATCACACCAGAGAACACACACGGGTGAGAAGCCCTTCAAATGTGGTGACTGTGGGAAAGCCTTCACTGAGAAGTCGAACCTCCTTCATCACAAGAGAACTCACACTGGGGAAAAGCCCTTTGGATGCAGTGACTGCGGGAAAGCCTTCGCATGGAAGCCACATCTCCTTCAGCATCAGAGAATTCACACGGGGGAGAAACCCTTTGAGTGCAGTGAGTGTGGGAAGGCATTTGTTCAAAAGGTGCAACTCATTAAGCATCAGAGACACCATACAGGAGAGAAGATCTATAAATGCAGTAGCTGTGAAAAAGCTTTTTTTGAGAAGACACAGCTTACGATCCATCAGAAAATCCATACGGGAGAGAGACCTTATACTTGTGGTGAATGTGGGAGATCTTTCACTAGAAACTCACATCTAATGAGGCATAAGCCAATTCATACAAGAGATAAGTGCTATAGGTGTAGTCAGTGTGGTAGTATCTTCAACAAGAAGTCACACCTTATCAGACATCAAAAAGATCATATAATAAAGGCCGTATAAATGCAGGGAGCTTGGATAGATGCTGTTAGATTCAGATGTCCCCCTAACACTTTTAGAGAATGTTCAGAAGAGTCTATCAAGACCATGACTGCTGAAACAGCTTTAGGAGTTGGGAATCAGAATGAAAAAAAGGAGGCTGTTTGTAGAGGTAGACGATATGAAAATAAGTTTTCCCAGAAGACACAGCTTAGTGCACGTGAGATAAGTTAGCATGGTAACAATGGTTTCAGTACTTCTAGAGAGAGCGCTAGAGCCTCTAGTCGAAGTTACAAGTATTAGACAGGAGAAAAGCTGTGATTGCAAGTGAGCCAGAGACCTCATCTGAAAGGGATAACCCATCGACCACTAAAGAATGCTAACAAAGGGTACTCTGAGTAAGAGTTCAGACTGATTATTTGAGGAGTGTAGTTAATGGGATCCTACTCCAGTGATTTTTGTGGGGGAGTTGTGTTCATTATATATGAATTACTGTAAAAAGTTGTCTGTCAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACTGACTGCTCTTCTGAAGGTTCTGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAAACAGTTACAGTGTACTTAAGTATAATAATAAATAAACCTAAAAAAAAAAAGTTGTCTATTTTAACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023284-Zfp605:NM_001163996:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.010 A=NA C2=0.189
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF0009621=zf-C2H2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.7)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000083891





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000108147, ENSMUSP00000122236
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr12:132927163-132933034 
ALTERNATIVE
HsaINT0187812
(ZNF605)
Human
(hg19)
chr12:133503749-133509298 
HsaINT0187813
(ZNF605)
Rat
(rn6)
chr12:52609564-52649153 
ALTERNATIVE
RnoINT0168441
(Zfp605)
Cow
(bosTau6)
chr17:44968693-44972112 
ALTERNATIVE
BtaINT0165784
(ZNF605)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"