BtaINT0165784 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005240 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr17:44966897-44972205:-
Coord C1 exon
chr17:44972113-44972205
Coord A exon
chr17:44968693-44972112
Coord C2 exon
chr17:44966897-44968692
Length
3420 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTCATTTTTTCCTTTTTAGAAA
3' ss Score
10.01
Exon sequences
Seq C1 exon
GTTATCAAGTTATCAAACCTGAGATGATCTTCAAGCTGGAGCAAGAAAACCCATGGTTATTAGATGAAGAAATCCTAAGTCAAAACTTCTCAG
Seq A exon
GTGAGAAATAATCAGTTTAGTGGCAGACAGCGAAAGTTAAATCTCAGGTTTTTGATGATAGATTGGTACTTTTGAAATGTTATTTGTAAATAACTCTGGTTAAAGCTTCTCCATCTTTGGAGTTGACTCAGGACTCTGTGTCCTGATCTCCACATTGGGATGTGTCCCCTTTGGAGCTGGTAATGAAATGTGCCTCTAGTGGCACAGTCATTCAGGACCTTGCATTCTTGATCAGACCCTTCTTTGAGTTTCCCCAGTTGACTTTTTCTTCTCTCCTGCCCCAGTCCCACCTGCAGAGGTAGGCTTCTTTTCTCCTCTTTAAGAATTCATAATTTTTTCCTGTTTTAGGTGATGCTGTTACCTTTGAATTTCCTTTATTATTTTGCTTTTCTCTCCCTAATTTATCAAATTTCTGTTTCAAACTCACATAGAGTAGACTGTGAGTCCATGGACAGAGAATAGAAGTCTAATGCCTAAAAGCATTCTTCCTGCCTCCTTGCAGATAAGAACTTCAGGGTCAGCATCCAGGGCATCTTTCTGGTGCCTTTGATGTTTAGCTTCTAAAGCTTCTTGTTTATCCCTTCAAATGGTCTGCGGGGGTTTAAGACTTGCTGTGTGATATATTTTACCTCCATTTGAGTTGAGGACCCTCACAGTATGGCAGCATCTTATCTGTGAAGTTTTTTCCTGTGCCCAGAGGTCACAATTGACTCCAGTTGAAGTAATTCCTTCCTTGTGTCTTTCACATGTTTCTCTGCATGTGGGCTTTTGTGCACACTTTTTCAATTAGATACCCTCCCCCTCTTTAAGCTCTATTTTTTCACTTCCACAGTGTTTCTTGACTCCCAGCCTTTTCTGAAATCTCTACCTACTGAGCAGTATTGTAGGAACTTGGGTCTGATCACACACTATCTATAATTATCTATAATTTCTTAACTAATTAGGTCTTGAGGTTTTTTCCCTACATAGAAAGATGGTAACTAACTTATTATTCTCTGTTCTTTATGACATTTATGCTGTGTAATTACTAAATATTTCATTAATTGGTTGTTGTGAGGCCAGGTAAAGCAGGATCTGTCTTATTTTTCAAATAATTTCTTTAGTACAAAGGTTTTCATCTAAGTAAGTGTTTCATCTTATTTGGGAAAATACTTCAAATTACAGATGTCGGCACCATTCACATGGATGATTAGGACTGGGTATGCGTAGTTTGGAAAAGCTGTCAAGATAGACTTTATGTTCCTCCATTAATTTAGAACCACTGCTATTTTGTGAAATGAGAGGAGTTGAGATAAAGTATGAGTCATGAAATAACATTGCAGGACCAGGGAATTATAATTTAGAAGATAATATAAAATAATTCAGTTTGAACATAATACATTTGTGTCAAAATGCAAAGTTAATTATCAGGATTAACTATATAGAAAGGAATTGCTTTAGAAGTTTAATGATAAGTGAATAGGGTTGTATAGAGGGCTTGTATGTACTATGTAGTGGGAGTACATCAGTGAAAAACTCAAACCTGTTCCCTACCTTCATTACATTCCAGTGGGAGAGACAGAAGTAAGGTGATTACCTATCTGATAAGTGCTATGAAGAGAATAAACAGGGTGTTTGTTAGTGTGCCCTTAAAATGATATGAAATAGGCATACTGGAAGCTGGGCAGGGAGAGGCTTTTGGGGTCACTGGGGGCAGGGAGGAGCCCAGTGTTGTGAGAGGAAGTTGAGGGCTGGAAGGAGCCAGGCATGCAGGGGTGTGTATGCTGTGTTAAAAGCCCAGATTTATCAAAGGTTTTTAAACAAGAGGTTTAAGCAAAAGGTTAGAGTACATTTTATAAAGATTGATGTGTGGAGACTAGAATTGGGAGGGCATGAGCCTGGAAGTGGGAATATCAAATGAAAAATAGGATGAAATGAAGGCTGAATGAATCAGAGTGTAACGGAAACAGAGATGTGGGGAAACAGACCTGTACCCCTACCAAGGATGATACTAGTAAAACATGGTCTATGTGTTTGCCAAAGTGCCAAGATTTTTTAAAAATTTCTTTAATAATTTTTTTTGGTACAGTTTAACCTCAGTATGGTTTTATATCATTTAATTTATTAGTTTGGATATATATCTTAATCTTATTCCTTGATTTGAATTAAAATTTATTTTTCTTTACTCTTACATTTAATGAGACAATTTTTTATAAACTCTTAAAGAGTATCTCACACTTATATGTCTGTAGGACATATAAGTGTCTCACACTTATATGAGAAGCTTATATAAATGGTATCTAACTTCCCTCTCTAGTCTTTAAAATGCCCATGAACAGTGTTATCATCTTTTACTCACTGAAGCTCAAAACGTTGAATCTTTTTTTTTTCTCCTCCATATCCACAGCTCTAGTTAGCTCTTCCTCTGAAATTCTGATATATCTGAGGGTTGTTAGATGAGGCTATTTCCCTCCCCAGATAAATTATCCTACAAAAAAAGAGTGATTGCTTTATATTTGAGATCTTGCCGTATTTTTTTCATCTTGGGAGAATTATCTCACATTCTTAGTAAAGAATATCATAAAGTAAACAAGCTTAAAAGATCATTAAGGGAGATCACAGATAACTGTACTTACAGGGTAAAAAAGAAAACTGTCCTAATATTATGCAAAGTATACTTGTGGTTTTGAGTAATTTACATCATATACAGATTCAGTATATAGATGATGATTCAATTAAAGTATCAGAAACCTTAATAAAGGTGTTGATGCTGAGCTCTGGAGAACTCTTAGATAATTCCAAAAAAGTATTTCTCATGATGGTGAAATTGCAGATATCAGTGATTTGGGTGATGATTTTGAATGAGGATGCTTTTTGAATGTACTGATAGTACAGAAAACTAACATATCTCACCTTTCAGACATGAAAGTTGATATCCTGTGTTTGCTGTCATTGTATTCAGTGTTTCTTCCTGTGTGACATTCAGCACTGTGTATTAATCTTGCTGTTCTCTGCACTTTGATACTCAGTACATCTGATACTGTGATACTCAGAAGTACTCAGTCTTCCCTCATGGGAGTACCTACTTGCCCTTTTCTGATTTCTGTTAATAATGTCTGGGCATATAGAAGATAATCAGTAGGTTATTGTGGAATGAGCACAGTGTTTGATTAGAAATTGCTTGTCTTTTTTATCTCATCATGATCACTTGAATATATTTCATTTTTCCTTATTTTAAAGTTTGTGTTTATAAACATTTGTAATTTCAAAATCTGTTTTCATTTCTATTAAAAAGTTCAAAGCCTAATAAGTAGATATTGTATGTGGGAGATTTTTTTTTTTTTTTAATGGACTGGGCTCATGCTCCATTTCCGAAGATTTGTTCAATAAGCTTAATGATTAGGGAAATTTACACAGTATGGTTCATTTTTTCCTTTTTAG
Seq C2 exon
AAAAAGTCTGGCTAGATAATAATCTCAAAATGTGGCATCAGGATAATCAAGACAAGCTTAAAAGTTTGGAGAGAGGCCATGAATATGACATCTTTGAGAGAATGTTTCATTTAGGCATTAACTTTGATCATTTAGGAATGAGATCCCATAAATGTGGCACAGGTGAAAAAAGTCTGAAGGATCCTTTTGATTTTCTTATTCCAAAAAGTAACTGTGAAAGAAAGAAACTTGATGAGCTTAATAGGAAATTATTATTTTGTATTAAACCTGCCAGAACTTATGGTGGAATAAAATACTCTGATGGCAATACATGTAGAAAAGTCAGCAGTAAAGAGCCAGGACTCATTATGAGCCATATACCACACACAGGAGTCTGTTTGTGCATGGAATGTGGCAAGGTTTTTAATAAAAAGTCACAGCTCATTATACATCAAAGAACTCATACAGGAGAGAAGCCCTATGGATGCCGGGACTGTGGGAAAGCTTTCTCCCAGAAGTCATTGCTCACTATTCATCAAAGGACTCATTCAGGAGAAAAACCATATGGGTGTGGGGAATGTCAGAAAGCTTTCAGTAGGAAATCACTGCTCATTTTACATCAGAGAACTCACACAGGAGAGAAGCCCTATGGCTGCAGTGACTGTGGGAAAGCCTTCAGCAGGAAGTCACAGCTTAAAAGACATCAGATAACCCATACAATAGAGAAGCCCTATGGCTGCAGTGACTGTGGGAAAGTCTTCTCCCAGAAATTAAAGCTCATTACACATCAGAGGACACACACAGGCGAGAAGCCCTACAGATGTAGTGATTGTGGAAAAGCCTTCTTTTGGAAGTCACAGCTTATAACTCATCAGAGGGTTCATACAGGGAAGAAGCCGTATGCCTGTAGTGAATGTAAAAAAGCCTTCAGCAGGAACTCACTCCTCATTAGGCATCAGAGGATCCATACAGGAGAGAAACCCTATGAATGCAGTGAATGTGGTGAAGCCTTCATCAGAAAACCACAACTTGTTAAACATCAAATGACTCATACGGGAGAGAAGAACTATCAGTGCAGTAATTGTGAGGAAGCCTTCTTTAAGAAGTCAGAACTAATTAAACATCAAAAGGTTCATTTAGGAGAAAGACCCTATGGATGTGTTGAATGTGGAAAAACCTTCTTTGGAAAGTCACAGCTCCTGACACATCAAAGAACTCACACTGGAGAGAAACCTTATGAATGTAGTGCCTGTGGGAAAGCCTTCACCCAGAAGTCCAGCCTGGTGTCCCATCAGAGGACACATACAGGGGAGAAACCTTATGAATGCAGTGAATGTGGGAAAACCTTCAGTGAGAAGTCAAGTCTCATTCACCATCAGAGAACCCATACTGGAGAAAAACCCTTCGAATGTGGTGAGTGTAGGAAAGCTTTTGCCTGGAAGCCACAGCTTCTTAGGCACCAGAGAATTCATACAGGGGAGAAACCCTATGGATGCAGTGAATGTGGAAAGGCATTTGTTCAGAAAGTACAGCTCATTAAACATCAGAGAAATCATACAGGAGAGAAGACCTATGGATGCAATGACTGTGCAAAAGCTTTCTTTGAGAAGGCACAGCTCATTATACATCAGAGAATTCATACAGGAGAGAGACCCTATAAATGTGAGGAATGTGGGAAGTCTTTCACTAGGAAGTCACACCTTATGAGGCATCAGAGGATCCATACAGGGGATAAGTACTATGGATGCAGTGAATGTGGGACTGTCTTCCACAGGAAGGCGCAGCTCCTGATTCATCAGAGAAGTCATATGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005240:ENSBTAT00000006896:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development