BtaINT0002812 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BLE0]
Coordinates
chr21:35211911-35212494:-
Coord C1 exon
chr21:35212359-35212494
Coord A exon
chr21:35212169-35212358
Coord C2 exon
chr21:35211911-35212168
Length
190 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TGCTTTTCCTCTACCTTCAGCTG
3' ss Score
9.76
Exon sequences
Seq C1 exon
CTCAATCAATGTCACCCTGGGGGCCCACAACATCATGGAACGAGAGAGGAAACAGCAGGTCATCCCGATGAGAAGAGCCATCCCCCACCCATGCTATAATAAAAAAACTTGGGCCAACGACATCATGTTACTGAAG
Seq A exon
GTGGGACATGAGGCTGCACTGACTCTGGGACACTTCCATCCAGGGTTCTGCATCCCCCATGAACCCACTCCTGACCCTCCTCCTGTACAACCCCTCCGTGGTCCCAATGCTGAGAAGAAGGCAACCCCATGACTGTCCTGCAGCCTCTGTGGGCCAACAGTAGGTGACAATGCTTTTCCTCTACCTTCAG
Seq C2 exon
CTGACTAGGAAGGCTGACATTACAGATGCAGTGAGCCCCATCGATCTGCCCAGGAGGCTGGCGAAGGTGAAGCCAGGGATGATGTGCAGTGTGGCCGGCTGGGGGCAACTGGGGGTAAATATGCCCTCTACAGACAAACTACAGGAGGTAGATCTTGAAGTCCAAAGTGAGGAGGAATGTATCGCTCGTTTCAAAAAGTACATCCCCTCCAAACAGATATGTGCTGGAAATCCAAGCAAGAGGAAGAATTCTTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013055:ENSBTAT00000017359:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCCCCACCCATGCTATA
R:
ACGAGCGATACATTCCTCCTCA
Band lengths:
248-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]