MmuINT0075446 @ mm9
Intron Retention
Gene
ENSMUSG00000059256 | Gzmd
Description
granzyme D [Source:MGI Symbol;Acc:MGI:109255]
Coordinates
chr14:56749037-56749631:-
Coord C1 exon
chr14:56749484-56749631
Coord A exon
chr14:56749298-56749483
Coord C2 exon
chr14:56749037-56749297
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCTCCCTCTTCCCTACCAGCTG
3' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTGTCCAAAGCTCAATGACAGTCACACTGGGGGCCCACAACATCACGGCTAAGGAGGAGACACAGCAGATCATCCCTGTGGCAAAAGACATTCCCCATCCAGATTATAATGCTACTATCTTCTACAGTGACATCATGCTGTTAAAG
Seq A exon
GTGAGACCTGTCACCTTCGCAACCACAAACCCCTGCCCCCTGGCTGTGCTCTTCTTGGTGCAGGGAGAGCCTCCCCCTCCTTTTCTGATACAGGTTCTTCTTCTCTCTCTTCCATCTTGACTTTCAAAGAGTCTCAGGCTAGCAGGCTCCTAGCTGAGCTGTTCTCTCCTCCCTCTTCCCTACCAG
Seq C2 exon
CTGGAGAGTAAGGCCAAGAGAACTAAAGCTGTGAGACCCCTCAAGTTGCCCAGATCCAATGCCCGGGTGAAGCCAGGGGATGTGTGCAGTGTGGCTGGCTGGGGGTCAAGGTCCATCAATGACACTAAAGCATCTGCCCGCCTGCGAGAGGTTCAACTGGTCATCCAGGAGGACGAGGAATGCAAAAAACGTTTCCGATACTACACTGAGACCACAGAGATTTGTGCTGGAGACTTGAAGAAAATAAAGACTCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059256-Gzmd:NM_010372:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCATCCCTGTGGCAAA
R:
GACCAGTTGAACCTCTCGCAG
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: