BtaINT0007344 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGA4]
Coordinates
chr21:35146344-35152203:+
Coord C1 exon
chr21:35146344-35146476
Coord A exon
chr21:35146477-35151945
Coord C2 exon
chr21:35151946-35152203
Length
5469 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTCTTGTCTCTTTCCATCAGCTG
3' ss Score
8.68
Exon sequences
Seq C1 exon
CTCAATCAATGTCACCCTGGGGGCCCACAACATCATGGACAGAGAGAGGACCCAGCAGTTCATCCCAGTGAGAAGACCCATCCCCTACCCACGCTATAATAAGACTTGGGCCAACGACATCATGTTACTGCAG
Seq A exon
GTGGGGCACGAGGCTGCACTGACTCTGGGACACTTCCTTCCTGGGGTTCTGCATCCCCCATGACCTCATTCTAGACCCTCCTGTATGACCCCTTCTGTGGTCCCAGAGCTGTGAAGAAGGCAACCCCATTAATGTCCTGCAGTCTCTATGGGCCATCAGTGGGTAAGAATGCCTTTCCTCTGCTTTCAGCTGATGAGGAAGGCAAATGTGACCACTGCTGTGAGCCCCATCAGTCTGCCCAGGGACTGGGATACAGTGAATCCAGGGATGCTGTGCAGTGTGGCTGGCTGGGGGCGTCTTGATGTGGATATGTCCCGCACAAAGAAACTACAGGAGGTAGAGCTTGAAGTCCAAAGGGCCGAGAAATGCACCTCTCGCTACAAATATTACAGTACCACCACCCAGATATGTGTAGGGGACCCGAGAAAGAGGAAGAGTTCCTTTAAGGTGAGCTCCCTAGTGTTATCCATGCAAAGCCTTGGTCTCTGGATCTGGGGCCATGGGAACGAGCTCTGTCCTGTGTCCCCAGCCTGTCCTCCTGTCCAGTCTCTGTCTGGGGTCCCTGGGGGATGGACATTGCCTCTAAGTCACATATGGGCAGAGGCTTCCTGTGGGAGGAGGTGGATTGTCAGGGCCAGATTGAAATCTCAGGACCAAGAAGACCCTTTTATCAGCCAGGGCCCCTAACAGGGACCACCCACCCCAGGGTGGCAGGGAGAACAGATCCAAAGAAGATGAGCTCAGCCCTTGCCCTCTCTGCCCACAGGGTGACTCCGGGGGCCCACTTGTGTGTAATGGTGTGGCCCAGGGCATTGTGTCCTATGGAAAAAAGGATGGGACACCTCCAAGGGTCTTCACCAGAATCTCAAGCTTTCTGCCTTGGATCCAAAAAACAATGAAACAGTACGAACTTGAGGGACCAGACTGAGGTTTCTCCAAGGACTGATCTGTCCATCTTCCCTGGGATGGAGGCACTGGGCAAAGTGGTTAGGCTGGCTGAAACTTAATAAACTTCCATCTCTTGAGCAGAAATCATGGATTTGTCCTTCACTTACCTAAACATATTCATTCAGCAAAGGCCGTGTCTGACCTGTTTATAGTTCTGATCTGTTACTGGCTTCCACCTCCAATACACCACCCTGTTCCAACTCTGGAATAAAAACTCCTGCTGCACTGATAGTCAGCTCCCTCCAGTCACACGTCCTCAGTGCCAGCTCCCTCTCCAGGCTAACCATGAGCTCCATCAGAGTAGGGAAACCCCTCTGAGGACTACACAACCCTCTTCTTGACAACCCTCGTGTCTCATCCATACACCTTCTTCCTCATCCACACCTACTCCCCTCCCCCCTAATCCCAGTGCCCTGGGGGAAAAGAAGAGAATCCAGATTTGGAAGGAGGGCCACATGAGGTTGAGGGTTGAGGCAGAGGGGCACTTGTCCACCCTAACAGAAATGGGGGAGGTTTACAAAGGTGTACTTCACCCCATGCAGTGTTCCTCCCTGCATCAGAGCAGGCAGAGCTCAGAAGCCTGAGAAAGTTCCAGGAGGCCTTCAGTATTCCTAGACCCAGCTTGAGTGCCTGTCACAGCCCTGTCTTGGAGTCCTGGGCCCAAGGCCCTGTGCAGCCTCTGGTGTCCTGAGGGCACATCCTCCTTCAGCCTCAAGTGACCTTGAGGGGGCTCTTCCACCTTGGGCTGACCAGCCACTCCCCACCTTCATCATTCCCATGTGTGTTTGTGCATAAATATATTTATCTCCAAAGGAAACTCACTCTAAAGAAAATCATTGGTTTCAAGGTATCCTAAAGTTTCAAAGAGTATCTATAGCCTATAGTTATTGGGTACGTTTCTTCCTGTATTTTTTTTTTTTTTTTTTTATCAATTGCTGAAGTTTTGATGCAAGGTTCAGAAAAGCAACCTTAGTTTTAAGACATGCAGTTTAGAGAGGGCTTAAGAGAAGTGGCTTGTTGAACATTTGAATGGAGAGTGAGCTTCAACTATTGCAAAATGTGTTCTGGCAGAAAGTAACACATATTCATCAAAATATATTCCTCATAAATGGAACATATGCAACACGGTGCGTGCAAGTGTGCTAAGTTACTTCAGGCGTGTCGGATTCTTTGTGACCCTATGGACGGTCGCCCTCCAGGCTCCTCTGCCCATTCATCATAGAAAGACAAATAAATACAGAACATATGGATGAGAAAAGGAAACGAAGTGCACTTCCACCACCCCCGATCATCATCATTCATGCTTAAGTATACTTCCTTCCACTATTTTTGTATTTATTCATAAAATGCTCTTGCTTCAACTCCCTTGGGATTGGGTTGTTTAGAGCTCCTCATGCCCTCCTTTCCATTCCTCTTTCTCTGTCCTCATACTGCTGAGAGTGTGGGGGTCATCTGCACATGTTTAGGATGGCCTGGCCCAGAGACAGCAGATATATGGCTCTCTGGCCTCTGGACAGGGAATACCTAGTGGGGAGTAAGTATTAGATGACGGGCATCTCTTTCCCCTTCACCACTCACCAGTGACCAGCATTTCTGGAGAGGAAGCCCCTCCTGACTCACAAACACCCTGATTCGGGTGGGACAGCCTCCGTCTCAGCTTGAGGGACAATATATACCTCAGCACAACCCAACCATGTCCCTCATTGCCGAAGGACCCGGTGATGGTTTTTTCCTGGTTCAGTGAATATCAAGTCCAGGACTTTCATTCAAAATTTTCAGATAAGAAAGGCTCTCTTTGTTACAGAATACTTATATTTAAACAAGAGATTCTAAATCCTCCAAAATTGTGAGGCTGGAACCCTGGCAAGATAGGAAATGGGGTTGCTGTTTGGGCCATTTGGCTGAATCCAGGCCTCTCTGCTCCTAAAGCAAGTGAAGTCTCTGCCTCACCCTTGGCCCAAGCAGAGCCCCATGCCGTAGTCCTCGAGCACATGTCCTCTGCCCACAGATTCTAGGGCTCCTCCAGCCCCTGAGCTTCTCAAGCACAGGGGCCATGTCGCTATATCCCTGACCCCTTCCTATTGGGTAATTCTTCATGCTTTCCCCAGAATCATAGAAGACCCAAGAAGGGAGAAACGAAGATCCTCTTGATTCAGTCACTGAGGTCCTCTGGGGATCCAGCTCCTCCCCTGGCTGCAACACAACCTCCACTTTCTTGCTGTTCCTCTTGCTCTGTGACTCAGCAGAGGGAGTGCAAGTGTGGTGACTGTGTTGTTCTCACCTATCCCACAGCAGAGAACATGGGCACATGTGACATGCTCACTCCCGGCTGGGGGGACCACAGCTCTGGGGGGTCTGTGGGGGCACCGAGCCTCCCCTGCTTCCTTCCCCTGTGCTTTGTGTCTGGAAGGAAGAAACCCCAGCAGCTCTGACCTGGGCAAATCTTCTGGAAGATGCAGCTACTCTTGCTCCTGATGGCCTTTCTGCCTCCTGGGCTAGGAAAGGTGAGTGATTATCCCCATTCCTGACAGGGTAGCCCATCTTACTAAACCTCCTGAAGTCCTGGCCCTTCTGCTCAGCTCCAATTTCTGAACCAGCTCCCATCCCAACTGAGACTACAAGTTTGATTCTCATAGACATTCAGCAAGGATGGACGGTAGGAAGTAAGCTTTCACTAAAAGCTTTTGTAGCTCTTAGCCTCTCTCTCACCACTGGTAAAGCTGGTTGCCCATTTGCTGGAGGATGTGAAGCTATAACACACAAGTAAGTAAAATTCCTCACTCCAGCCAGGAAAGGACAACTCAGACAAACCATCCACAGCGCAGGGGTTCTCAGTGGACCCAGCTTAAGAACCAGAGAAACTTGTCAGTTTCCCTGCCCTTCACTCCTGCCCAGGAGAGGAGCCCAGGGTGTGACTGGTCAGAAATGGCTAGATGGCAGCACCCAAAGCTCTCTGGGTGTCGTTACTCTTCCCCAGGCCCTAAGCAGTTCATTTTCTGCCCCAGTGTCTTTGGCATGTCCTCCCCCATCCCTGTGGTCTTAAATCCCACCAGTACTATCCCCACCAAACCTCAGCCAAAAGCTAACTGGAGGCCATTCAGGCGTCCAGTCAACAGATGTTTACTGAGATCCTCAGATGCGTTATGCCCTAGGACATGAGGATTTTAGAAAACCCAACTCCATAAACTCATAGGTGGATTGTTAGAAAATGGCACCAATCAGGATGTTAGCAGAGGCTCAGAGGGGTTAGGAGACTCCATGAGAATGAGGGCTCATCCATGATCTTCTGGGCTCCACCTTCTGGAAGGCAGTCTCGGGCCCCTTCATATGTGTGTGTGACTCAGGATGTGGAGAACAATACTGAGGTTTGGGGTTTAGAAAAGGTTATCCCACAGCAGTGAGAACCTGGGGGACTCTCCCCTCGTGTCTGTTGGGCACCGTCGACCCACCTTGACTGCCACCTTCCCGAACCTCCCTTCTAACCATAGCCTATCCCATCTCCCCATCTTTTAGCCTTTTCTTTCAGAGGAGATCACTGGGGGCCACGAGGCCAAGCCCCACTCCCGCCCCTACATGGCTTTGGTTCAGTTTTGGGTGAGAAGAGTTGGAAGAAGTGTGGCGGTGTTCTCATACAAAAGGACTTTGTTTGATAGCTGCTCACTGCAGAGGAAGGTGAGGGGCAGTAGCCAGCCTGGACAGGGACCCGTCCTCTCCCCAGGAGCTGAGCCCAGGGGTACCCCTCCTTCACCCCAGGATCCTGGAAATCAGGACCACAAGAGCTCATCAGACAAGCCATCTTATGAGCAGGACTAGGGTAATGAAAAGCTGAGAAACAGGACAAGTAGAGTTTTGTGGTTAGTGGGTCGGAGGTGAGAACAAGAGACAGGGTTGAGAAGGGTTGACCCACAATGGCCAAATAAAGCATCAGAGAAGGATGAGAGTGTGCAGTGAGAGCCAAAACCCAAACTCAGAGTCACTTCACAATATTGCTGAGAAAGCTCCTGGAGCCCTGCCCTCATGTCCCTGAGAAGCACTGGGCCCAGAGTCGCCAGCCCCAGGACCGTCTGTCACCCAACTCCCCCTCAGCTGCTGCCCTGCCCTGGTGTCAGCTGCCTGTCACAGCTCCTAGGCTGTATCTCCAGTGACCCCATGATCCCCACACCCCTGCTCTGGTCTCTGAGCAGCTCAATCAATGTCACCCTGGGGGCCCACAACATCAAACAGCAGGAGAGGACCCAGCAGGTCATCCGATGAGAAGAGCCATCTGCCACCCAGACTATAATCCTAGGAACTTCTCCAACGACATCATGTAACTGCAGGCAAGGAAAACTCCCCACTGGCCCTGCCCTCCTGAGATCAGATCATTGCCTTCCCAGGATCTCCTTCCTCTTTCTTCCTTCCCATCCTGGCCACCTGACCAGTCTCATGGGGAGAGTTGAGAGATGGAGTCCCTGCAGCCTCATCATGGCATCCAGGCCAGAGGACCACCAGCTGAGCCAGACTCTTGTCTCTTTCCATCAG
Seq C2 exon
CTGGAGAGAAAGGCCAAGCAGATGTCAGCTGTGAAGCCCCTTAGTCTGCCTAAGGCCAAGGCCCAGATGAAGCCAGGACAGGTGTGCAGTCTGGCCGGCTGGGGGCAGGTGGCCCTGGGCACTCCAGCCACCACCTTGCAGGAGGCAGAGCTGATGGTACAGGAGGATCGGATGTGTGAATCACTCAACCCCAGGCACTACAGCCGGGCCACCCAGAATTGTGTTGGGGACCCAAGGAAGGTGAAAACCGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038159:ENSBTAT00000057123:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]