BtaINT0002842 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BEQ4]
Coordinates
chr21:35170176-35170750:+
Coord C1 exon
chr21:35170176-35170329
Coord A exon
chr21:35170330-35170495
Coord C2 exon
chr21:35170496-35170750
Length
166 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACCTGCATGCTTCCTGTCAGCTG
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTTCTCTTTCCTTTGCAGCCAAATAAATGTCATCCTGGGGGCCCACAACATCAGGACATTGGAAAGCACCCAGCAGCGCATCCCTGTGCTCAGATCCATCCCCCACCCTGGATACAGTCAGCAGAACAAGAGGAATGACATCATGTTACTGCAG
Seq A exon
GTACCGACCCTCTGGTTCTTTAGCTGGGCGGCTCATTCCCAGCCTGGGGGGCTTCCTGTGTCCTGGGATCAGGGAGGGGGGAAGCCGGGCAGACTCCCAGGGCAGTGGCGGGCATGGGGTGAGTGTAGAATAGACAGTCCCTGAGCACCTGCATGCTTCCTGTCAG
Seq C2 exon
CTGGCGAACAGAGCTCAGCGTAATCGATTTGTGAGGCCGGTGCCTCTGCCTCAGACTCAAAACAGACTGAGACCTGGGACCCAGTGCACCGTGGCCGGCTGGGGCCTGATCGGCCTGAACATGAGAACAGACACGCTCCAGTGTGTGCAGCTGAGGGTGCAGAGGGATAGGGTGTGCAGGAGACGCTTCATGTTATACTATGGCCGGACACAGATTTGCGTGGGGGACCCGAGACAGAGGAAGTCTGCCTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013234:ENSBTAT00000017607:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(37.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACAACATCAGGACATT
R:
CACTGGAGCGTGTCTGTTCTC
Band lengths:
258-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]