MmuINT0043766 @ mm10
Intron Retention
Gene
ENSMUSG00000040314 | Ctsg
Description
cathepsin G [Source:MGI Symbol;Acc:MGI:88563]
Coordinates
chr14:56100543-56101109:-
Coord C1 exon
chr14:56100974-56101109
Coord A exon
chr14:56100798-56100973
Coord C2 exon
chr14:56100543-56100797
Length
176 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
CTACATCCATATCCTGACAGCTG
3' ss Score
6.41
Exon sequences
Seq C1 exon
CTCCATAAATGTTACTCTAGGGGCCCACAACATCCAAATGCGAGAAAGGACCCAGCAACTCATCACAGTGCTCAGAGCCATCCGCCATCCTGATTACAATCCGCAGAACATCCGGAATGACATCATGCTTCTGCAG
Seq A exon
GTGCTCCCCTTTCCCTTCTGACCTCTGCTTCTCCAGGCTTGCTGGCGACCTCTTGGTCTGTGGCATTTGAGGAGGAAGTCGGGGCAGGGTTCCAGGGTGGTGAGGGAGACGCGAAATCCCTAAGTGCTGATGGGAAAGAGCAGTGAGCTGAAATGCCTACATCCATATCCTGACAG
Seq C2 exon
CTGAGGCGCAGAGCCCGGAGGAGTGGATCGGTGAAGCCTGTGGCTCTGCCTCAGGCCAGCAAAAAACTGCAGCCAGGGGATTTGTGCACAGTGGCTGGCTGGGGCCGGGTAAGCCAGAGCAGGGGAACAAATGTACTCCAGGAGGTGCAGCTAAGAGTGCAGATGGACCAAATGTGCGCCAATCGCTTCCAGTTCTACAACAGCCAGACTCAGATCTGTGTGGGAAACCCGAGAGAAAGGAAGTCTGCCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040314:ENSMUST00000015583:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCAGCAACTCATCACAG
R:
CTGCACTCTTAGCTGCACCTC
Band lengths:
251-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types