RnoINT0043338 @ rn6
Intron Retention
Gene
ENSRNOG00000020647 | Ctsg
Description
cathepsin G [Source:RGD Symbol;Acc:1307681]
Coordinates
chr15:35111767-35112329:-
Coord C1 exon
chr15:35112191-35112329
Coord A exon
chr15:35112022-35112190
Coord C2 exon
chr15:35111767-35112021
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
GCCTTCATCCCTTCTAACAGCTG
3' ss Score
9.14
Exon sequences
Seq C1 exon
CTCCATAAATGTTACCCTAGGGGCCCACAACATTCGAAGGCAAGAAGGGACCCAGCAACACATCACTGTTCTCAGAGCCATCCGCCATCCTGATTACAATCCCCCGCCAGTCATCCAGAATGACATCATGCTACTGCAG
Seq A exon
GTACTCCCTTTCTGACCACTGCTTCTCCAGGCTTGCGGGCTCCCTCTTGGCATGTGGCTTTTCAGGAGGAAGTCAGGGCAGGATTCCAGGGTGGTGTGGGGGACTCGGAATCCCTGAGTGCTGATGGGTGATAGCAGCTGAGCTGGAATGCCTTCATCCCTTCTAACAG
Seq C2 exon
CTGAGGAGTAGAGCCCGGAGGAGTCGAGCGGTGAAGCCCGTGGCTCTGCCTCAAGCCACCAAGAGAGTACAACCAGGGGCTTTGTGCACAGTGGCTGGCTGGGGCCTGGTGAGCCAGCGCAGGGGGACAAATGTACTCCAGGAGGTGAAGCTAAGAGTGCAGACGGACCAAACGTGCGCCAATCGTTTCCAATTCTACAACAGCCAGACTCAGATCTGTGTGGGAAACCCGAGAGAAAGGAAGTCTGCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020647:ENSRNOT00000059677:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTTCTCAGAGCCATCCG
R:
GTTTGGTCCGTCTGCACTCTT
Band lengths:
249-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]