BtaINT0008269 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BAD2]
Coordinates
chr21:35184786-35185334:-
Coord C1 exon
chr21:35185199-35185334
Coord A exon
chr21:35185041-35185198
Coord C2 exon
chr21:35184786-35185040
Length
158 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
GCCTGCACACTTCCTGCCAGCTG
3' ss Score
5.53
Exon sequences
Seq C1 exon
CCAAATAAATGTCATCTTGGGGATCCACAGTGTCACCGCTTCTGAATGGACGCAGCAGCGCATCCCTGTTCTCAGACCCATCCCCCACCCCAGATACAATCAGCGGAACAACCAGAACGACATCATGTTACTGCAG
Seq A exon
GTACCGACCCTTTGGTTCTTCAACTGGGTGGCTCTCTCCCAGCTTGGGGGGCTTCATGTGTCCTGGGACCATGGAGGGGGAATCAGGGCTGACTCCCAGGGTGGTGGTGGGCATGGGATGAGTATACAGTCCCTGAGTGCCTGCACACTTCCTGCCAG
Seq C2 exon
CTGGCGAACAGAGCCAGACAGAATGAAGCTGTGAGGCTGGTAGCTCTGCCTCAGACAGAGGAAATGCTGAGCCCTGGGACCCAGTGCACCGTGGCCGGCTGGGGCCTCACCAGACTGCACAGGAGAGCAATCACACTCCAGGAGGTGCAGCTGACAATTCAGAGGGATGGAGAGTGTCACAGTCGCTTTGATTTCTACACTGGCCAAAAGCAGATCTGTGTAGGGGACCCAAGAGAGGGGAAGTCCACTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040134:ENSBTAT00000054741:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCACCCCAGATACAATC
R:
AGCGACTGTGACACTCTCCAT
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]