BtaINT0003589 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112133768-112134102:+
Coord C1 exon
chr8:112133768-112133813
Coord A exon
chr8:112133814-112134052
Coord C2 exon
chr8:112134053-112134102
Length
239 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTTTTTTTTTCTTTTACAGTTA
3' ss Score
12.29
Exon sequences
Seq C1 exon
ATACTATTGGAATGGAGAAATAGAAGAAGCCACTGAGGTCCTGTTG
Seq A exon
GTGAGTGAAGCTGGAGGGATGGGGCCTTAATTGGGAAAGAGTGAGAGCAAAGTTCCAATTAAATATTAGCAAAGATAACTGACTGAGGTTCTTGCCCCACACAAGATGCCCTATGCCCATTTGTCAGTGACTGGGCTGGGGGCCTGGAGGAGTGCTGTTTCCTAAAAAGCCAGAGGAATGGAGGGCTGTGGAGCTGGAGCTGAGATCCTAAACCAGTGTTTTTTTTTTTTCTTTTACAG
Seq C2 exon
TTAATAAAGACAAAGACTTCCAAGATCCATATGCTTTCCAGCTACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957:ENSBTAT00000022554:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
NA
C2:
PF0309110=CutA1=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]