MmuINT0046269 @ mm9
Intron Retention
Gene
ENSMUSG00000026870 | D730039F16Rik
Description
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
Coordinates
chr2:34743272-34743691:+
Coord C1 exon
chr2:34743272-34743317
Coord A exon
chr2:34743318-34743641
Coord C2 exon
chr2:34743642-34743691
Length
324 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TAATTTTCTTCTCGTCACAGCTA
3' ss Score
7.25
Exon sequences
Seq C1 exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTG
Seq A exon
GTAAGTGAGGTTTGGGCAAAGGAGGTTTTAATAGGAGAACATGTGACATCAGAGCCTTTTCCCAGGATGCGCTTAGAAACTAGCGATGAGGACAGGGATGTAACCCAGCAACGACTCCTTACATGCGGGAGGCCTTGAGTCTGATACCCATAGAAGAAAAGAAATTAGCACTAATCAATAGATTGAGGTTCTTACCCCACCTAAGATGTCTGATGAGCCTTATTAACAAGCTAGAAACCTGGCCTGGTGACCCGGGAGGAATGCTAAATGGCTAAGTGAATAATTCAGGTTCCAAATTTCCGATTAATTTTCTTCTCGTCACAG
Seq C2 exon
CTAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGTTTGCCTATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026870-D730039F16Rik:NM_030021:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(26.3=100)
A:
NA
C2:
PF0309110=CutA1=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: