BtaINT0003823 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG57]
Coordinates
chr25:34344546-34345053:-
Coord C1 exon
chr25:34344951-34345053
Coord A exon
chr25:34344723-34344950
Coord C2 exon
chr25:34344546-34344722
Length
228 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ATCTTTTCTTTCGTCCCTAGACG
3' ss Score
11.83
Exon sequences
Seq C1 exon
CCTCCACCTCCCCAGCTTGGTTATTCGATCACTGCTGAGGACTTGGACTTGGAAAAGAAAGCTTCGTTACAATGGTTTAACAAAGTCTTAGAGGATAAGACTG
Seq A exon
GTAAGGAATATAGATCAGTTTCCCACTCCAGAGAGGCTTTGTCTCCTTGGGTTTTATTTTGGTCTTTCTCATGTGGGAAATCCATTTGGGCCCTCAGTGGAATCTGGAGAATGGTGAGCATTGAAGGGAAACCTTTGTGAGTTGTACCGAGGCCCCAGACTTCCCGTGCTCCGTGATACGCAACTGGAAAGAGTTCCCAAACAGTGTCATCTTTTCTTTCGTCCCTAG
Seq C2 exon
ACGCTGCCTCGACCTCTGTTACCGAGGCCCCACCTGCCGGTCAGTCTTCCTTCACTTTGACCCTGCCTGCCGCTGGGACTGCTTCATCCCCAACCACCCTCCAAGCCCCTAGCGCTAACCCACTTTTGGAGAGCTTGAAGAAGATGCAGAATTCCCCGGGGCTACCTTCCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017939:ENSBTAT00000023854:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=PD(13.0=88.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTCCCCAGCTTGGTTAT
R:
CAGGGAGGGAAGGTAGCCC
Band lengths:
277-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]