GgaINT0132147 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:304630-305230:-
Coord C1 exon
chr19:305128-305230
Coord A exon
chr19:304792-305127
Coord C2 exon
chr19:304630-304791
Length
336 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TTCTTGCTTCCTTCTATTAGATC
3' ss Score
8.5
Exon sequences
Seq C1 exon
CCCCCGCCGCCTCAGCTGGGCTACTCCATTACGTCGGAGGACCTGGACGCGGAGAAGAAGGCAGCGTTGCAGTGGTTCAACAAAGTCTTGGAGGATAAGCCTG
Seq A exon
GTAAGGGCTGTGGGCAGACTGGGCACCTGGGGTACAGCAGGGAATGGGGAGGGGTTGGAACCCAGGCATGAGTCTGGCTGGCTGGCAGTGAGGCATCTGTTGCACAGACCAGGGATGCTCGCAAGCGAGTCCTGCGTGTTCCTTGGATCTGAGGATGCTCAGAGTCTTAAGGCTGACAGTGGTTGTGTCCCAGAGCCCGCAGGGTGGTGGCTGAGGTCCCTCAGGGCCAGAGCTGTGGGATGCTGGTGTGGTTTTCTTACCTCTAGGGAAGCTCTGCTAATGGGTAGTCCCCTACAGCAGGTTTACAGATGCTGATTTCTTGCTTCCTTCTATTAG
Seq C2 exon
ATCCAGTCCCCAACACCACTGCAGAGAGTACACCTGTGTCCAGGCCATTGGCATTCACAGTGACCACAGGGACCTCCTCAACGCCTGTGTCAACAGCTCATGTCCCTGAGAGCAGCAACTTGCTCCTGGACAGCCTGAAGAAGATGCAGAGCAGCCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694:ENSGALT00000001368:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=PD(14.7=88.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTCAGCTGGGCTACTC
R:
CTGGCTGCTCTGCATCTTCTT
Band lengths:
254-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]