BtaINT0004174 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr12:34054052-34054513:-
Coord C1 exon
chr12:34054483-34054513
Coord A exon
chr12:34054197-34054482
Coord C2 exon
chr12:34054052-34054196
Length
286 bp
Sequences
Splice sites
5' ss Seq
TTGGGGAGG
5' ss Score
-0.75
3' ss Seq
CCCGCGCCTCTTCTCCGCAGGAC
3' ss Score
11.96
Exon sequences
Seq C1 exon
CTGCGGGTCTGGCGCAGGGGCTGCAGGTTTG
Seq A exon
GGGAGGGGATGGAAGGAGGAGGGAAGGGGGAGGGAGGGGGGAAGGGGGAGGGAGCGGGGGGAGGGACGAGTGGGGGCGGGGCCGAGGTTCCCACCCGCGGAGAGGCTCCTCCGCCTGGGGACCAGCGGGCGGGGCGGGGCTGGCGCCCGTCTCCAGGGCAGCAGAGGGACTGGGTGGCGCGACGCCCGGAGCATCCTTCCAGCTAGTCCCCGCCCGCCGGTGCTGCCGCCGCTACCCTGCGTGACTTCTTTGTGTTTTGCGTTCTGCCCGCGCCTCTTCTCCGCAG
Seq C2 exon
GACCTGTCCGTCCTCCCCCGGGCTACAAGAAGGCAGACGATGAGATGTCCCGGGCCACGTCTGTTGGAGACCAGCTGGACGTACCAGCCCGCACCATTTACCTCAACCAACCGCATCTCAACAAATTCTGCGACAACCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529:ENSBTAT00000061132:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development