BtaINT0004511 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44250171-44251934:+
Coord C1 exon
chr22:44250171-44250365
Coord A exon
chr22:44250366-44251813
Coord C2 exon
chr22:44251814-44251934
Length
1448 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
AATGAATGGGTCTCTTTTAGGTT
3' ss Score
8.05
Exon sequences
Seq C1 exon
GCGTGGGAGGACCGTTTGATTCGAATACAAGAAACGATTGATGAATGGTTAAAGGTACAAGCTCACTGGCTATACTTGGAGCCCATTTTTTGCTCTGAGGATATCATGCAACAGATGCCAGAAGAAGGGCGTCAGTTTCAGACAGTAGACAGACACTGGAGGGATATCATGAAGTTTTGTGCGAAAGATCCAAAG
Seq A exon
GTGAAGTATTTGTTTTCTCTCTTTCAAATAAAGGGGAAACCTTTATTTCTGGCTATTACAAAAGGCATTTCACTTTTTTTCCAACTACAGAAATAAAACCTACTCATTGTATACAAACTGGAAAGCTCAGGGAAATAAAAGGAAGCATAAATAATTTTACTTTTCCATTCTTAAGATACACTATTCATAACCCTTTAATATGTATAGTGGAGCTGCTTCAAATGTGCATTTAACTTACTTGGCTTCTAGAATGTATACTCCATGCTTCCTCTTGTAAAGTAAACAGTAAAGGGGACTTCCCCGGTGGTCCAGTGGCTAGGACTCCATACTTCCAATGCAGGGGGCCTGAGTTCGATCCCAGGCCAGGGAACTAGATCACACACACCACGACTAAGACCCAGTACAGCCAAATAAAGAAATGAAAATAAATATTTAGAAAAAAAATAAATAGTAAAATAAAGTGAAGGAAGCCAGAGGGTGGGGGAGAGAGAGGGAAAGAGAGAGAGAGAATGAATATGAATGAATATGAGTCATGCAGGTGACTCACCTGACATTCTACTCGGTGACTCTGTATGCTTGGGGTGATGGGAAAAAGAGTCAGCAGTTCTCGCAGCTGGTCTCACTTGCTCTGTGTCTCTCCTGGTGAGTATAGCACCCTGTTGAATGTAATTTTAATGTTGAAAGGCAGGCCATGTATTTTTTATACATGTAGATATATATGCACTTAAAAAAAATCTGGTACTCAACTTAATAAATAACAATCTATTTCAATGCTGGATGAAAAAGTAGCTGTGCTGGACTGTTGAGAATCAATAGTACTAAAATTTATGTTTGGAAGACTTCCCTTACGTGTTGATTTTAGAACCTTTTTAAGACAGTATTTCTTAGAGAACTGAAATCAGAAGTTTTTTTTTTTCTGCAAAGGGCTGCATGGTAAATACATGATAAATACTTTATGAGACCTACTGTGTTTTTTATAACTACTCAATTCTGCTATTGTAGCAAGAAAGTGGCCAAAGACAATATGTAACTGAATGGATGTGTCCATACAATAATGTAACTGTTTATGGACACTGACATTTTCATGTGCCATGAGATGGTTTTCTTCTTGTAATTTATTGAACCTTTTAAAAGTGTAAAAATAGACTGTTTATAGTTGACAGTTGTAAATATAAAAATTAAATCACAAACAAAACTAGCATATTCTTCCCCTATCATTCAAAAGAATACAGGAAAAATGAAAATATATATGACAATGATAATTTCTCACAACTATCAACTTTGGGTAAGAATACTTATGATTTACTTAGTTTTACATTACAAAAACTTCCTGACAATTTTCATAAGTCTTTTGACATCTTAACATTTTTAATGTATAAGTTAATGTTGAGATCTTATCATTATATCTGGTATATAAGTTCTGACCTGAATGAATGGGTCTCTTTTAG
Seq C2 exon
GTTCTTGCTGCTACTTCTTTAACAGGTTTACTGGAAAAACTGCAGAACTGCAATGAACTTTTGGAGAAAATTATGAAAGGCCTTAACGCATATCTTGAAAAAAACGACTTTTCTTCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGGACCGTTTGATTCG
R:
CGAGGGAAGAAAAGTCGTTTTT
Band lengths:
314-1762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]