RnoINT0048731 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2428938-2430832:+
Coord C1 exon
chr16:2428938-2429132
Coord A exon
chr16:2429133-2430710
Coord C2 exon
chr16:2430711-2430832
Length
1578 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TATGACTCTGTGTCTTTTAGGTT
3' ss Score
11.72
Exon sequences
Seq C1 exon
GCCTGGGAAGACCGTCTGATTCGAATCCAGGAGACCATTGATGAGTGGTTGAAAGTGCAAGCTCAGTGGCTGTACTTAGAGCCCATCTTCTGTTCTGAGGACATCATGCAGCAGATGCCAGAGGAAGGGCGGCAGTTTCAGACAGTAGACAGACACTGGAAGGATATCATGAAGTTCTGTGCTAAAGATCCAAAG
Seq A exon
GTGAAGGGTTTGTTTTCTTTCTTATGACAGGTGAACCTTAAAGAAAGCATTTGACTTTCTTCTGATTATTAAAACACAACTCATGCATTGTATACAAATTGGAAAGACCATAAAATGTAAGCTCATAAATGTAAGTTTGAAAGTATCAAAATAATTTTATTTTTCACTTCATAAAAGTACTACTTGCAACACACACACACACACACACACACACACACACAGTGTAACTACTTTAGATGAACAGTTAACTGAATTGACTCCCACTATATTCAACCACCTCAGAAAGTAAACAGATACATAAAACAGTGAGATAAAGCAGAGGACGGAGGATGTGTGATCAGCACAAGTGACTGTGTTTGCTTGCAATTGTTAATCAGGGAATACAATTGAGACCTCGATTGGTCTCGGTTCCTGTGTGCCTTTCCTATTAAGAGTACCTTGTACAGGATTCTAATGTTGAAAACCAGTTTTTTTCCACGCATTTAGCATAAACCACAGCTATGCATCGACTTTTAAAATGCATTCAACTTAAGGAATAAGTTTTTTCAATGCTGAGAGAAAAGCTAAATGCATACTAGATTTATTGAGCGTTAATTAGAGAAATGTATGGATTTCAAGGAAATTTATCTTCCTTTTTTATTTAGGAGCTTGCACATGATGTCTTGTAGATTAGAGGTCAGCAGTCTTCTTCTGTGAATAGCAGTTAACACATTTCGTTAGGCTGTGTAAAGCATGCAGTCTATTTTTCAATCCTTTGTTCACCCATCATATAGTAAAACGCAGCCAGAACTAACAGTTAACGAATGGGTATGTTTCTATCATGACAAAATATTGCTCATAGACACTGGCAATGTTGTTACTTAGGCAGGGCCTCTAGCCCAAGTTGCTTCAAATTCTCTCCGTAGCTGAGATGACCTTGAACTTCTCATCCTCCCACATCTACCTGTGGAAGCCTGGGGTTGCAGCCGTGGGCCAGCACGCTCAGTTTACACATGGTGCTGGCAATAGAATCCTAGGCTTCACTCATGCTAGGCAAGCATGCTGCCCCTGAGCTGCTTCCCTAGTCCTCTTTTAATTTTTTAACCTTCTGAAAGTATAAAAAAACATTCTTGGTTTGAGGACTATACAGAAGCTATCAGACAGCTAGATTTTGTTGGTGAGATGTAGATTGCTAAAGCCTGCTGTCAATCAAGTTTAAAATTCACAGTTATAAAACCTAAAATAATGAATGAATAATCATAAAATATGCACATAACTAATAATAATATGCATAATAACTAATGTTATTGGATTATATGTATGATGTAGTGAATTTTGTAATTTTTATATTATAAAAGAATTTCAAAGCTGGATGTGGTTCCTATAATCCCGGCATTTGGGGGGCTAGAGCAAAAAGAGAATTACAAACCCATGGCCAGCCTGGGCTATAGTGAGACCTGTTTCAAAAAGGAAGGGGAGGGAATATTTCACTACTAATTTTATAAAGCTTCAAAAAAGTTAACATTTTCCATTTCCCATTAGTGTTTATGTCTTCTGTGAAGTACATAGGTATGTCTCATATGACTCTGTGTCTTTTAG
Seq C2 exon
GTTCTTGCTGCTACTTCTTTAACAGGCTTGTTGGAAAAACTACAGAATTGCAATGACCTTCTGGATAAAATCATGAAAGGACTGAATGCATACCTTGAGAAGAAGCGACTTTTCTTCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(14.5=100)
A:
NA
C2:
PF083938=DHC_N2=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGACCGTCTGATTCGA
R:
CGAGGGAAGAAAAGTCGCTTCT
Band lengths:
314-1892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]