BtaINT0004967 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDL7]
Coordinates
chr11:103806912-103807882:-
Coord C1 exon
chr11:103807320-103807882
Coord A exon
chr11:103807000-103807319
Coord C2 exon
chr11:103806912-103806999
Length
320 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
CGGTGCTTCTCTCTCGAAAGGTT
3' ss Score
8.75
Exon sequences
Seq C1 exon
CTTCTGCCTGTGTTTGAACAGAGCCTTGAACCCCACCAAGACTCTGGAGGTGGGAGGCCCCCAGGATGGCTGGGAGGGCACACCCTTGCTGATGCCAGCCAGCTCCTCCCTGGGGCCCCTGAAGTTCCAGGACCTGAGTACGAACTGCCAGAGCCCGGGTCTCTGCATTTACCTGGACCCTGAGGAGTCGGAGCGCCTGGGCATGCCGGGCCCCCTGCACTTCCGGTACAAGCAGGCCCGGCTGCAGGCCCTGGAGACCATGGCCAACATCCTGAAGCAGCGGATCGATGTCCTGACGGACAAGCTGCGCCGCTCCGAGGCAATGGACGCACTGGTGGGGCCTGGCCCAGGCCTGCTGCCCTCCAGCTCCAGCACGCCGGCCTGCCCCGGAGCCCTCGTGCCCAATGTGGGCCAAGGGGTGCCTGGGGACTGGGCAGGGCTGCAGGCCAGGCCGCTTCTCTGCACCCCTGGCTTCCTGGACACGGAAACGGTGCGCTGGAGCCCTGGCTGGGAGCGGCTGCAGAGTGCGAGCCCCAGGGCCCGCCACGTCAGCGAGCCCATAG
Seq A exon
GTAGGGCTACCCCCAGGCCCTGCCGGCAGCCAGGGGACCCCCACTTTCTCCTTGCCCCGGGTCTCTTCCCCTCCCCAGCAATTGTCCCTCTGTGCCTGCTGTTGCCCCCTTGCCTCTGGAGGGGGAGGGGTGGGCCCCAGTCCTGAGGTTGATGTCCTGCCCCCTCCCCACCCCGGCTCTGCAGAGGGGCGAGAACGCAGGACCCCTGTGCCTCCTGCCGTGGGGATGTGGGGGGACCATCTCACTCCCTGCAAAGCGGCAGCCCCTCCCCACCCTGCCAGCCTGTAGGAAGTGAAGTCCCGGTGCTTCTCTCTCGAAAG
Seq C2 exon
GTTTCATGGACGATGGACGCTCCGAGCTGGACGGGAGGCTGGCAAGAAACGTGGCTTCTTTCCAGGCCCTCAGCCCCTTCGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023064:ENSBTAT00000031357:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCTGAAGCAGCGGATC
R:
AAGAAGCCACGTTTCTTGCCA
Band lengths:
358-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development