MmuINT0004680 @ mm10
Intron Retention
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26275462-26276267:-
Coord C1 exon
chr2:26275907-26276267
Coord A exon
chr2:26275634-26275906
Coord C2 exon
chr2:26275462-26275633
Length
273 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
AAGGCTTCCATGCTCTGCAGGTC
3' ss Score
7.32
Exon sequences
Seq C1 exon
TACAAGCAAGCCCGGCTGCAGGCACTGGAGACCATGGCTGAGGCCCTCAGGCAACGTGTTGACATCCTAACCACCAAGCTGGACAAGCCGACGTCTCCTGACACATCTGGTGACCTGGCATCCGACGTGCTGCCCTTGTGCCCCAGCACAGCACCTGCCACCCCTACACTCGTTCCGCCCTCTTACCTCAGAACCTTAATGTCTAAAGGGGGCAGAGAAAGTCCCCGGGACTTGGTGGATTCACAGGCTGAGCCCCTTCTCCTCAGCACCTGCTTCCAGGATGGTGAAATGCTACCATGGAGCCCCAGTTGGGAGCTGCCGAACCCAAACCTGGGGACCCACATTGAAAGCCAGCCCCAAG
Seq A exon
GTAGGGCTGGACAATGGGTGTCATGCCTGTTGGATGATCCTTGGGCTAGGAGCAACAGGGCCCCATTCAGTTTCTTGTCTGGAGAGCAGGGTGGTTGTTGCCCAGACTATGAGGGTGGTGACAATAGCTGATGCTCCAGGAGTGACACACAGCACAGGCCATAGCTGTCTTGTCCTGTGTTGGGGGAGGAGGAGGCTCTTCCTGAAGCCTGCTGCCTACCTGCCCTACTTCCCCAAAGGGCAAGAAGGCCATCAAGGCTTCCATGCTCTGCAG
Seq C2 exon
GTCCTGTTTCTAGCACCCCTGCCTCAGTGTCTCAGGTCATCCCTCACACTCAGTCTTGCCCTGCTGGCTCATCAAGTCATGGGGCCCTTTCCAAAGAAGCCATACAGGGGCTGGAGAAGAAGCTGCAGAGAGAGATGGCTACCCTCCAGGCCCTCGGTGCGTGCATGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038:ENSMUST00000057224:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.822
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCCCTCTTACCTCAGAAC
R:
TCTTCTCCAGCCCCTGTATGG
Band lengths:
308-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types