Special

HsaINT1006598 @ hg38

Intron Retention

Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136285513-136286695:-
Coord C1 exon
chr9:136286085-136286695
Coord A exon
chr9:136285607-136286084
Coord C2 exon
chr9:136285513-136285606
Length
478 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CAGGTGCCCTCTTCTCCAAGGTT
3' ss Score
6.54
Exon sequences
Seq C1 exon
CTTCTGCCTGTGTTTGAACAGAGCCTGGAACCATGCTGAGACCCTAGATCCCCCAGGGATGGGGGGCCCCCAAGATGGCCGGGATGCCCCCGTGCTGCTGTCAGCTTCACCCTCTCTGGGATCCCTGGAGCTCCAGGACCTGACCACCCGCTACCTACCCCGGGGGATGTGCATCTACCTGGACCCAAAGGAGGCTGAGCACCTGGGCACTTCCAGCTCCCTGCACCTCCGGCATAAGCAGGCGCAGCTGCAGGCGCTAGAGACCACAGCCAAAGTCCTCAAGCAGCGGGTCGATAGCCTCACCGCCAAGCTGCAGGGTGCCGAAGCGCTGGACACCGTCAGGGACCCAGCTGTGGGCCTGCTGCGCTCGTGCCCCCACAGCCTACCTGCCGCCCCCACGCTCGCCACCCCCACGCTTGCCACCCCAGCCTGCCCTGGAGCCTTGGGGCCCAACTGGGGCAGAGGGGCACCTGGGGAGTGGGTGAGCATGCAGCCCCAGCCCCTTCTGCCCCCGACCTACTTCCTGGACGGCGAGACACTGTCGTGGGGCCCCAGCTGGGAGCAACAGCAGAGTGTGAGCCCGAGGGCCCACTGCGAGAGCAAGCCCCGAG
Seq A exon
GTAGGCCGGCACCCGGGACACGGTGACCGCTGGGTGGCCAGGGGGTCCTGTGGGCTGGGAGGAATGGGGACCCCATTTTCTCTCTGAGCCTTGGTTTCCTTTCTGGAAAGGGGGCTAGGAGGACAACAGTCCAGGGGGTCTGAGCAGCATAGTGTACGTGGGCTTTCCCACGTGGCATGTGGTGTGTGTGGGCTCATCCTTGTGGGATGTGTGAGCTCTCCTGTGTGGCACATGGCACCCGCAGCAGCTATTGCTCCTGTCTTGTTCTCTGGCCAGAAGGGTGAGGCCGCTCCAGTGGCTCCTTCCCTGCTGCCTCCCTGCCCTTCCTCCAGCAGAGAGGCCTGAGGGCCAGGGAGGCTGCCACACCCCCACCCCTGTCAGGTGTGTCTCAGGCTCCTCTCCTGCTGTGATGGCTTGGGTCCCCCGTCCCGTGCTCCCGGCTGACCAGGGAGTGAAGCCAGGTGCCCTCTTCTCCAAG
Seq C2 exon
GTTTTCCAGAGGAGGGACACGTGGACGTGAAACCAGACAAAAGGCTGCAGAGAGGCGTGGCCCCCTTCCAGGCCCTCAGCCCCTCTGCGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220:ENST00000569961:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.455 A=NA C2=0.860
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCAGCGGGTCGATAG
R:
ACGTGTCCCTCCTCTGGAAAA
Band lengths:
356-834
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains