BtaINT0005155 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily c (LOC511498), mRNA. [Source:RefSeq mRNA;Acc:NM_001075520]
Coordinates
chr26:20911266-20913649:-
Coord C1 exon
chr26:20913412-20913649
Coord A exon
chr26:20911429-20913411
Coord C2 exon
chr26:20911266-20911428
Length
1983 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTGTTTGCATCTCTTTACAGTTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GTACAAGACTCTGCTAACAAGCAACCCAAACAGTTACTAACACCGAGTAACCAAGATGGAACGACTGGAAATCACTACTCTTGCTCTTGTGATTTGTGTCACTTGCCTGGTTTTTCTTTTTGTGTGGAAGAAAAGTCACAAAGGTTTGGGAAAGCTCCCTCCTGGTCCAACTCCCCTTCCCATCATTGGGAATCTGATGCAACTAAACCTCAAGGACATCCCTGCATCTCTTTCCAAG
Seq A exon
GTAAGGGGGTTTTATTAGGGGCTGGTCATCTCCAGGTAAAGGGGAGTCACCTTCAGATTATCTTTGTGTCATCTTTAACTTTTCTTATTAATAGTTTTACTCACTGCTAAGGCACTTTGGTGTATCTATTTCTGTATTACAAGACAGATGTTCTCCCCCACCCCCTTTATTTTTTTCTGAATTGGATCACTTTAGAGGTGACAGTGAAGTGTGTTAACCTGACCTGAGATACAGATTGAATTCTAGTGAATGGGAAAATTCTGAAGTCAGAACATATTTTAACCAAAAGTCTTCTAAACCTCTCTGCATGTAACACTAACCAAAAGACAATCAAATGTAAAAAAAAAAAAAGTAAATAATGTCCTTTTATGTTATTATTACTATTTCAGACTAATCTATGGGATAATTTGTGATCCTCCTTTTGAAGAGTGATCCTCACACCTTGCTCTGACACAACTCAGCTGTGCTCCCCAACTGACATTCACTCCTTTGAGTTCATTGTGCTAGTATACATTCTCCAAAAATTCCCTAATTACTGTCGTCTGACCAATGAATAAAGAAAGTACAATGTGCACGCGCACACACACACGCACATACCGAGGAATATTATTTCCCCTTAATGAAGGAGGAAATCCTGTCACTGACAGCAACATTGATGAACCTGGAGGATATCCTAAATTATAGAAGCCAGGCACAGAAGGACAAATACTATATGAACTCACTTACATGGGGACTCTAAAAGAGTCATAGAAGTAGGGAGTAGAATGGTGGTTGCCAGGGACTGGGGGAGGAAGAGAAATAGGGTGATGTTCAATATTGCTGTAAAAAAGGAAAGTCAAGTTGCCATAGCTAAAAGGGAATGGAATCCAGTGCATAAGCTGGAGGATTGGGCCTTTTTCGGGGCATGGAGAGTCATTTATATTAACAGAGAACTATGTATATGGGTACAGATTCAAGTGAACAAGAAGCTATGGTAGCAGCACGTGGACATTCTCTTCCTTCTATTATCTCTGTGAAATAGGGAGCAACATCATCAGCTGAGGGTGAGGTTGGAAGGGAAGGGCCTGATGTTTTGTGCCCCAAAGTACAGAGAGACACTCCTTCAGAGGAACCAAGAAAGTAGTTTCATTCTCCTTGGACAGAGAAAACAGAAAGTAGCAAAATTCTCTACCATTTAAGTGTAAGTTTTAAAAAGTGTAGGAAAGGCAGAAAGAAAAAAGAGGTGGCAAGTTCAGTAAGTTTTGCCATTTAAGAATTTTACTTAAAAAAATGGAGGATTGTAATATGCATATGGATCTTTAAATGTAACTTTATTTTTGTTCAACTATTTAGAACATGAACATGTTTCCATACCATCATACATCTTCACATAAGTACTTTCAAATGGCTACTTTAAATTCACATGCATGGATGTAAAATACATTTGAAAACAAATCCCTAGCTGGCAGCTGTTTTAGTACTCTATTTTTCCCCTTGACACAATGCTATCATAAATATGTAATTTCATTCTTTTTAATACCTACTAAGTAAGCTCTCTTTGTCTTGTCATGGCTGCTTCCTTCTCATCTCTAGTTTTTTCTTAAACGTCACCTCCTCATAGAATTCTCATCTATTTTGTTAAGTTTTCCCATTATCATCTAGCATAAGTACATTCTTTACCACTTTCATAGAATCATGTGCAGCTTGTATTGCAAATGTAGTTTGTTTTGCGCCTGTTACTTCCACTAGACTCTAAGTTCCGTGAGGGTTCCCGGCACAATGTCTGACAGAATATAATTGCTTAGTAAATATTTATATTGCTCAGTGGTTGCATGTATAGATGAAGGAAAGAATGAATCCATGACTGTAGCCCAGGTTAAATGACTGAAAGGAACTTAATGGAGCAAAGTCTAAGCTACGTGTGAATCATTAGTTAATTCCCACCAAAGCCTCCAATGGAGAGATTTCACAATAGCCCTTATAGTTGTTTGCATCTCTTTACAG
Seq C2 exon
TTGGCCAAACAATATGGACCTGTTTACACTCTGCACCTTGGATCCCAGACCACTGTGGTCTTACATGGATATGAAGTGGTGAAGGAAGCTCTAATTGACCAAGGTGATGAATTCCTTGGCAGAGCACATTTTCCTATTATTGACGATACCCAGAGAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023939:ENSBTAT00000032930:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=42.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCTAACAAGCAACCCA
R:
TGCTCTGCCAAGGAATTCATCA
Band lengths:
357-2340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]