RnoINT0044313 @ rn6
Intron Retention
Gene
ENSRNOG00000013291 | Cyp2c23
Description
cytochrome P450, family 2, subfamily c, polypeptide 23 [Source:RGD Symbol;Acc:620370]
Coordinates
chr1:263796223-263803150:-
Coord C1 exon
chr1:263802947-263803150
Coord A exon
chr1:263796386-263802946
Coord C2 exon
chr1:263796223-263796385
Length
6561 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTGCTTCTGTCTCCTTCCAGCTG
3' ss Score
12.57
Exon sequences
Seq C1 exon
CTCCATGAACATCCCAGGGCTAAAATGGAGCTGCTGGGATTCACTACGCTTGCTCTCGTGGTTTCGGTGACTTGCCTCAGCCTCCTTTCAGTGTGGACAAAACTGCGCACTAGGGGGAGGCTGCCCCCGGGCCCCACCCCCCTTCCCATTATTGGGAATCTACTGCAACTGAACCTCAAGGACATCCCTGCATCGCTTTCCAAG
Seq A exon
GTAAGGTGCTTTCCTTCTAGGATGTTTGCCTCCAGGTTAAGCACTCACCTCTCGGTTCTGCTCAGACCTCAGGAGCGCAGGCTATCCCACTGCCTGCTTAGATCTGCTTACCACATAGGCTCTTTGGGGGTGGAGGGTGTTTTGTTTGTTTGTTTGGTTGGTTGGTCGTAGTGAGAGGCCCCAACCTACCTGGAGATAATTTGTTAGCTTCCAAATAAGATTCTGGATTAGAACATAGTTTATGTGACCAGCTGGCCCCATTAGTACATAACACCAAAAGACAAGCTCAGCCAACATAAACACGTAGATTAGTATTTTATACTAAATTATCTGTGGGAAACCTTGTGACTCTCCTTCTAATGAGGACCTCTCCCCTCCCTAACACTCTCCTGTAATGGCACAACGTGGCTGCCCCGGCTGCAGTGAGAGTGATGTCTCCGTAAGTTCACTGTGGGAAAATACATTCTTCAAGATGGAGAAACTGTATGAAAATTTCTCTGATTATACATCTTTGAGCTAAATAAGCGATTAGATGAACAGATTAGTCCATATTTTATGACAAGATGTCTTTCTGATCCTGGGAATGTTAACACCTAACAGTAGAAAAATGCCCTACTTGGGCAAGCATATTTTAATAGGATGACTCAGACAGAGTGAAAACGGGTCTTTGTACCTTCGCTATAGCAAGAAACAACACAGAGATGGAAAGGAGTAAGCCTTTAGTGTAACTCACTTTTAAAACTATACTTTATTATGTTTATTTAGTCTGTGAGCGTATGTCTGTGTTTCTGTGCTGGACAGCACATGCCGTGGGCACACGTGGAAGCCAGCAAACACCTTGAAGGCCTGGATTCTCTCTTTCCACCAAAAGTCTAACACAGGAAACCAAACTTGGAGGCAGGTACCTTTACCTGCTGAGTCATCGAATTGGCCCAACTTTACTTTTTTTACCCCAGAGATTAGTAGGTGATTTTTTTCATTCATTAATTAATTTACTTCACATTCTAATGGCAAATTCTCCTCCCTCCTCTCCTCCCAGCCCCTCCCTCTCCCCTCCCCTTCCTTTCTCCTCAGAGAAGGGGAGGCCACCCACGGATATCAACCTACCTTGGCATATCAAGTTATAGTAGAACTAGGTGAGGCCCGTGCCCTGTGAGAGAACCAATCCCTGACACTATTTGCAGACGAAAGCCTAAGGTAACTGTCACCTTGAGGGGCTTCTTCACCCAGCCCCTGATGACGGAGACAGATGCAGAGACCCACAGCTAAACATTAGGTGGAGCTTGGAGAAGCTTGTGGAAGAGGGGGAGGAAGGATTGAAGGAGCCAGAGAGAGGTCAAGAACACCACAAAAACAAAACCAAATCAAACAAAACCAAAGCCTTACAGAATCAATTAACCTGGGCCCCTAGGGGCTCGCTGAGACTGAACGGCCAACCAGAGTGTTCCCTGCACATATATCACAGACATATAGCTGGGTCTTCATGTGGGGCCCCTAACAGCAGGAGCAAGAGCTGTCTCTGACTCTGTTGCCTGCCTTTGGGTTGCTTTGCCTTAACTGGGCTGCCTTGTCTTGTCTCAATAGAAGATGCACTAGTCCTACACCAACAGTGAGTTCTATGGTGTAATTGATCCCCTGTTCCTCCCCATGCACAGAACTACCCATTTGCATCCCACACCAGTGGGGCATTTTTTGGTTTGTTTTTTTTTTGTAATTGAGGAACTGCATCAATCATTATCATCCGGAGTTCAAAGTTCACTTTATCATCCAGAGTTCAAAGTTCACATTTGAGTGCTGCCCGTTGCAGTCTCTGGACTTGGACCCGTGTATAATGGTACGTATCTGCCCTTAAAAATGTCAGAACAGTTTCAGTGCCCTAGAACTCCTGAGTTGCCTTGGCAACCACAGCTCTTCGACTGTCTCCATAGCTGCGCGTTTTCCTAAAATGTCATATGGATGACTCACACACCATGAAACCTTTTCCAGTTGTTTCCTTCTGCTTAATAATAAGCATCTAAGAATTCCTCCTGGTCTATCCTGGCTCAGCTGTCATTTCCGTCTGACTAATCGCAACCTGTGTGGTCATTCACCTTTGGCAACTACACGTAAAATGGCTGTAAACATCCCTGTGAGGGTTTTTGTGTAGTCCTAAGTTATCAGCTCTTTGGAGCTACCAAGGACACACAGTTGCTGGAGCATATGCTTAGTTTTGTGAGAAACGGCCAAATAAGATGACAGTTAGAGCCATCGAGTTTAACCCGAGAAAAGTGCTTTCTGCATGAAACAAACGATGAAGCCCAGTACTCTGTAGCACAGGGTGCTTAGCAGAGTCGAGGCATATGGAGGGGGCGAGTGCAGATAAAATAAGAAAATGAGCAGGAGCCAGCCGCAGTGCTGAGCTCAGAAGAGTGGGTCTCGAGATCGTTTGAGGGCTGCTGGAAGGATGTTAGCTCCTATTCCAAAAGGCAGGACATCAGAGGTTTTAGGTGGAGTGACATAATGCATCCTATGTTTTAACCACAGGGCTCTGTGGACTTGTAAATATACTCAAACAGAGGCAGGCTACCTGTGCAGCAATGATCTAGGGGAGATGGCGGTGTCTGGGGCTAGTGTAAGAACAGAGGAGGTTAGGAGGGGTGGCTAGATCTAACTGCATCTGGGAGAGAGACAGCAACAAGGTCCGTTCGCTGGCTTGTTGAGAGGTGCATGATAAGGAATTAGGAATAGTTGCTACCTCTCAGCTGAGCGGGTTGCTACAGAATAAGATGGGAGACTATGGGATCGGGCTTTTGGTTTATTTGATATTAGTGAGGTAGGGAATACGCAAAGCTCAGCCTTAGAGATGCTGTCTCAGAGACCTACTACTGATTGGATGAATGTACGAGCAGGCAGTTCAACATAGTTCAACAAATGGGGGCTGAGCCCACATTTACAGTTTGAAGATTCAGGAGACAGAATGTACTTATAGCCAAGAAATTGGATAGGATCATATGGGAATGGGTAGACTGAGGCACAATCTCAAGGTCACCCTAATAAAGGGGTCAGCCAGATAGACGTCTCAAGGAGAACTAAACAGGAGGAGCCACTGAGGTGAAAATAGCCACCAAAGAGTGGGGTGTCCTGGAACCCAAGGGAAGGATACATTAAACGAACTGTTTTAACCACGTCAACACCAGTGGCTGGCCCAGTGGCTGGCCCAGTGACTGGCCCAGTGGGATGAGACAGTGAGGTAGAGCTTTCAAGGGAGCTTCAGGAAAGACGCTTTCAGTACAGCAGTGTTAAGGGATTGTGTTGAGGTTACAAGAAAGGATAGGGGACAGAAAGTAAAGACAGCAGATTTGACAACTTGTCATAGCTTTGCTGAGAGGGACTGTGCTTTGCACTATAGCTCGAAGGAATTAGAACCCAGTGCACATCTTGAGAAATTGCCCGTCCCCATCATGAAGAGTCATCTACAGTAACAGAAAACTATGCCCGTGGGCACAGGTTCAGGAGAGTGAGAGCTGCTGCGGTGGACACTGCAGATGGAAACTTTCTGTCCCTTGCATTATCCCTGGAAGCTACAGAGAAGAGTCATCACCTCAGAGAGGGGTTGGAAGAGGAAGGCCAGGCAGGGCGGTCCCAAAGTACAGCAGGACTCTTAATGGCAGGTGAAACTTCAGCTTTGGGAATGCAAAGGAATGGTATAAGACGTTAGAACTGTCCACCAATAGAGAGGAAGCTAAGAGGTGAGTGGGGAATAAAGAAGAACAGAAAGAAAAAGAACAAAAGAGAAACCCCAGGGAGGGAGAGGAAAACAATGAAGGAATTGTAACTCCTTTGAGCCTAGTAGAAACAAGAATCACGAACAACACAACACCAACGAAACTATCTTAATAGGATTTTATTGATGCAAAGAGATACCATGACCAAGGCAACTCTTAGAAAGGCATTTAACGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAGAAAAGAAAGGCATTTAACTGAGGGCTGGCTTTCATCAGTCCATTATCATCATAGCAGGCAGCATGGCAGCCCGTAGGCTGTCGTGGTACTGAGGGAGCCAAGAGTTCTATCTTGACCCAAAGGCATCCAGAAGGAGACTGTCTTTCACAGGCAGCCAGCAGGGGGCGCGCTTCCGCATTGGGCGGAGCCTGAGCGTAGGAGACTTCAAAGCCTGCCTCACAGTGACACACTTCCTCCAATAAGGGCACACCTCCTGACAGTGCCACTTCCGATGGGCCAAGCATTCAAACCACCACAAAAACAAAACCAAACAATCAAACAAACAAAAATGTTTTATTATACTGGGTCATAGAAGGCCATTTTAGTGCAAGTATACAGTACTCACTCCTCCCATACCTCGTCATCCTCTTTCTCCTCCCCATGCCCACTAATCCCCTTATCTCCCTGGCAGTCTCACTTCTTTAGAGTCATCTGTACACATATGATTCTATGTGTCTGTATAAAATATGGAACCCATCAGTGAAAGAAAACGTGCTCAAAGGGGTTAGGGATTTAGCTCAGTGGTAGAGCGCTAGCCTAGCAAGCGCAAAGCCCTGGATTCGATCCTCAGCTCCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAGAAAACGTGCTCAAGTTGTAACCGAATTATTGAACACAAACTTGCATATAAATATCTGCTTGTTGGTATAGATTGTTGTCTGTATGCAGGTGAAGGCAGGCACAAGATAAGGCAAGGCCTGTGATTGGGCAGTGAGAAAGTAGGGCGGGCACAGAGTTTTGGAGAGAGGAGAAAGGTGAAGAAGAGCCGAGATGGAGGAGGAGGAGAAGACGACCCAGACCGATGTGGCTTCAAATGGCCACAGGTAGTTATGATTATCTTATAAGGGATGGATTATTACAGGACAATTTGTCTTATCTAGATGGGCAGTTTATAACAATATCAGTTGGCTCTGAGTGTTTTGTGTGGACGTTTTGCGGGGAGAGAATTTACTGATATAAATCCAGTTGATAAATTACAAGCTTCTAGAGTTTTGATTTTACTGGGATACTGGGTATTCTGACTTTACCCACAGAGGGCAGATGCTGGGACTGTGAACAGAGTTCCCAGCAGAGAGTTGCCAGAGGGTGGTTGCTGCTGGGGCCAGAGAGTAGCCAGCAGCAATGTGGGGCTAGCCGAGGTGGCGAGATCGCTGCAGGGCCCAAGAGTAGCCGGTGACAGCAAGGATGGAAATTGGAAACTTAGTGAGTCGGGTTGAGACGCTTTGCTGATTAAGATGAAGGTACCCCGCAGGCGACACGTGGCCCTCCAGAGCCAGCAACAGCGTGGGTCGGTGCATTTTGTATTTTTAATATTTACCACAACATGTTGGGGCTGAGGGAATGCTTTAGTGGTAAAGCTCTTTGCCAAGCAAACGTGAGGACCAGAGTTCAGATCCTTAGAACCACTTAGGCTGAGCACAGTGGTGCAAGCTGAGCACGGTGGTGTGCGTCTGGAACCACCATGTCCCTCCAGTGAGATGGACGGCAGAGACAGGAGACTCCCCCAGAAGTTTGTGGTTTAGATAGCCTGGCAGATACAGTACTTTAGCCAACAACAAAGAGACTGCCTCAAACAAGATACTAGGCAGAAGACTCATACCCAAGACCTCCTCTGACCTCCACACATATGCTACGGAATATGCAGTCCCCTACATATTTGCACACACATCACACATATATAATAGTATATGCAATATCGTGTATAATAAATATGTGTGCACACAAGTTTTCTATAAATTTTTGGGGGGTGGGTATAGAAATGTAGGTCAGAGCTGCAGACGTGTTTCCCAACCTCTTCTGACTCAGTTAACCTACCATGATTAGTTCCGTTGCATCAGTTTCCCTACAGCGACATAGTTCCATTCCTCTTTATGATGGGGGAAAAAAATCCGTTCCCTGTGTATAATATAAGTGCCACTTAATATAAGTGTCTTTTAGATCTCTCCCTGTGTTGTTTTATTAAGCTCTTCTTTGGCGTCCAATACTTCGTTCTTTATCAATCAATGCCATAGAACCATCATCATTTGAAGGTAAATGTCATTTATTTGGTTGTTTCTGTGTTTTTTTTTTTTAATTGTTCACCATGTATCACCAGTACGTTCACCGTGTCTATATGTACTGTGCCACATAAGGACACTGGCATTCGTGGAGAGAATGTGCGTTGGAGATATTCTACCCCAAATGTGACTGTTTCTTTCCTCGTACTTCCAATGGGTTTTACACTCGACAGTGGCTCCTAGGGTGCATGGCGGCTGCAGCAGTCCAGATGCCCAGTGACTAAGGCTGCACGTGCAAATGAAGGAATGAAGTAGACTGCACACTTAGGGTTAAATTCCTAAGTCGAGACTCGTGGAGCAGAGGCCAATCCCTGTGCAAAACTCACTCAGAAGCTTCCAATGAAGAGGTTTCACAACACCATTTACGCAAGTGCTTCTGTCTCCTTCCAG
Seq C2 exon
CTGGCCAAAGAGTACGGGCCTGTTTACACGCTGTACTTTGGAACCTCTCCTACTGTGGTCCTACATGGCTATGATGTGGTGAAGGAGGCGCTTCTCCAGCAAGGGGATGAGTTCCTCGGGAGAGGACCTCTGCCCATCATCGAAGATACCCATAAGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013291:ENSRNOT00000017840:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]