BtaINT0005181 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6N4]
Coordinates
chr26:16234242-16234711:+
Coord C1 exon
chr26:16234242-16234404
Coord A exon
chr26:16234405-16234561
Coord C2 exon
chr26:16234562-16234711
Length
157 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCTGTTTCTCCTCCTGGTAGGAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
CTTTCAAAAGTCTATGGCCCTGTGTTCACTGTGTATTTTGGCATGAAGCCCATCGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCCCTGATTGATCTGGGAGAGGAGTTTTCTGGAAGAGGAATGTTTCCATTGGCTGAAAGAGCTAATATAGTAAATG
Seq A exon
GTATGTGTTAAGCATTGGCAATGGGAGTGGGCAGAATGGAAACAGGAATTTGAAGAGCTCTCCAGCAGAGCTTGGTCCATATGGGGGCCTGCCAAGTGCCAGCTTACTTCTCCTTCCCTAGGATCTCCCTCCTAGTTTCTGTTTCTCCTCCTGGTAG
Seq C2 exon
GAATCCTTTTCAGCAATGGGAAGACATGGAAGGAGATACGGCGCTTCTCCCTCATGACCCTGAGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAAGCCTGCTGCCTGGTGGAGGAGTTGAGAAAAACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023955:ENSBTAT00000007005:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTGTGTTCACTGTGTA
R:
TCGGTCCTCAATGCTCCTCTT
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]