MmuINT0044909 @ mm10
Intron Retention
Gene
ENSMUSG00000067231 | Cyp2c65
Description
cytochrome P450, family 2, subfamily c, polypeptide 65 [Source:MGI Symbol;Acc:MGI:1919553]
Coordinates
chr19:39069091-39069607:+
Coord C1 exon
chr19:39069091-39069253
Coord A exon
chr19:39069254-39069457
Coord C2 exon
chr19:39069458-39069607
Length
204 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
ACTTCTTCTCTTCCTTTTAGGGG
3' ss Score
12.46
Exon sequences
Seq C1 exon
TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAAGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG
Seq A exon
GTAAGTGTCCATGTGCCTAAGTGTCCATGCATCCAACTGTGCTCATGTACCCATGTGTTCATGTGTGTGTGTTAGACTGTGGTCATAGGGAATATGAGGATAGAAAGCCGACTTGAAACTTGTTCAATCCCAGCTGATGGCAGCCACCTATCAGCACCTTTACTTACCTGGGAACTCCCTACTCACTTCTTCTCTTCCTTTTAG
Seq C2 exon
GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067231:ENSMUST00000087236:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAGTCTATGGCCCTGTGT
R:
TTCATCCACAAGACAGCGAGC
Band lengths:
294-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types