BtaINT0046182 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037795 | CYP2C87
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 87 (CYP2C87), mRNA. [Source:RefSeq mRNA;Acc:NM_001076427]
Coordinates
chr26:16031631-16032114:+
Coord C1 exon
chr26:16031631-16031793
Coord A exon
chr26:16031794-16031964
Coord C2 exon
chr26:16031965-16032114
Length
171 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TCTGTTTCTCCTCCCATCAGGAA
3' ss Score
11.35
Exon sequences
Seq C1 exon
CTCTCAAAAGTCTACGGCCCTGTGTTCACTGTGTATTTTGGAATGAAGCCCACAGTAGTTTTGCATGGATATGAAGCAGTGAAGGAAGCTCTGATTGATTTGGGAGAGGAGTTTTCTAGAAGAGGCAGTTTCCCAGTGATTGAAAGAAATGTTAAGGGACACG
Seq A exon
GTAGGTGTGTATTTGCACATGTTCAGCTTTGATAATGGGTAGGGGTGGTCAGGGTGAAAAACAGGAATTTCAGGAGCCCCCCAGCAGAGCTTGTTCGTCTCAGTCTCCCAAGTGTCAGTTCACGCCTCCTTCCCTAGGACCTCCCTCCTATTCTGTTTCTCCTCCCATCAG
Seq C2 exon
GAATCGTATTCAGCAACGGGAAAACGTGGAAGGAGACCCGCCGCTTCTCCCTCATGACGCTGCGTAATTTCGGGATGGGCAAGAGGAGCATCGAGGACCGCGTTCAAGAGGAAGCGCGCTGCCTGGTGGAGGAGCTCCGAAAAACCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037795:ENSBTAT00000027159:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTACGGCCCTGTGTTCA
R:
CCTCTTGCCCATCCCGAAATT
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]