RnoINT0081454 @ rn6
Intron Retention
Gene
ENSRNOG00000001466 | LOC100361492
Description
cytochrome P450, family 2, subfamily c, polypeptide 55-like [Source:RGD Symbol;Acc:2320073]
Coordinates
chr1:258234323-258234812:+
Coord C1 exon
chr1:258234323-258234479
Coord A exon
chr1:258234480-258234662
Coord C2 exon
chr1:258234663-258234812
Length
183 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCCATTTCCTGTTCTGGTAGGGG
3' ss Score
6.5
Exon sequences
Seq C1 exon
TTCTCAGAAGTCTATGGCCCTGTATTCACTCTGTACTTTGGACTGAAGCCTACTGTGGTAGTATATGGATATGAAGTGGTAAAGGAAGTCCTGGATGGAGAGGAGTTTTCTGGTCGGGGTGTCTTCCCAATTGTTACAAAAGTGAATAATGACCTTG
Seq A exon
GTAAGTGTGCTTATGTACATATGTGTATATATGTGCATTTATGTATATGTATATCTATCCTAGTCAGAGATTGTGGGGATGAGACAGGAAAAGTTTCTTAGGAAGGGAGCCAAGTGGTAGTCAGGGGACATTCCCTTCTTTGTCTGAGTTCTCCCTTTTAGCTTCCATTTCCTGTTCTGGTAG
Seq C2 exon
GGGTCATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGTTTCTCACTTATGACCTTGAGAAATTTTGGGATGGGGAAGAGGAGCATCGAGGATCGAATTCAAGAGGAAGCCTCCTGTCTTGTGGAAGAGCTAAGAAAAACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001466:ENSRNOT00000001990:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGAAGCCTACTGTGGT
R:
TCTTCCACAAGACAGGAGGCT
Band lengths:
252-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]