MmuINT0044901 @ mm10
Intron Retention
Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39011020-39011839:+
Coord C1 exon
chr19:39011020-39011182
Coord A exon
chr19:39011183-39011689
Coord C2 exon
chr19:39011690-39011839
Length
507 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTGTTTCCTGTTCTGGTAGGGG
3' ss Score
7.27
Exon sequences
Seq C1 exon
TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG
Seq A exon
GTAAGTGTGCATGTATGCACATGCATGTTTATGCATGTGTATGCTGAGCATGGATCATAGGGACTAGACAGGAAAATCTCCTTAGGCAGTGTCTTAGGGTTTTATTGCTGTGAACAGACACCATGACCAAGGTAACTCATAAGGATGCCATTCAGTTGGGGCTGTCTTACAGGTTCAGAGGTTCAGTCCATTATCATCACGATAGGAGCAAGGGGGTGTCCAAGTAGGCATGGTGCAGGAGCAGCTGAGAGTTTTCCCTCTTCATTTGAAGGCCATTAGAAAAAGACTGACTTCCAGGCAGCTATAACAAGGGTCTTAAAGCCCACACTCACAGTAACACATTTCCTCCAACAAGGCCACACCTACTCCAGCAATACCCCAAATAGTGCCACTCCCAGGACCAAGCATATTCAAACCACCACCGGCAGGGAGCCAAGTGGCAGTCAGGGTCCTGTTCCCTCCATTGTCTGGGTTCTCCTTTCTAGTTTCTGTTTCCTGTTCTGGTAG
Seq C2 exon
GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002:ENSMUST00000025966:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAAAGTCTATGGCCCCG
R:
TTTGCTTTTCTTAGCTCTTCCACA
Band lengths:
310-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types