RnoINT0044322 @ rn6
Intron Retention
Gene
ENSRNOG00000013241 | Cyp2c24
Description
cytochrome P450, family 2, subfamily c, polypeptide 24 [Source:RGD Symbol;Acc:1563697]
Coordinates
chr1:258094127-258094984:+
Coord C1 exon
chr1:258094127-258094289
Coord A exon
chr1:258094290-258094834
Coord C2 exon
chr1:258094835-258094984
Length
545 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCCATTTCCTGTTCTGGTAGGGG
3' ss Score
6.5
Exon sequences
Seq C1 exon
TTCTCAAAAATTTATGGCCCTGTGTTCACTCTGTACTTTGGTCCGAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCCCTGGATGATCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTCCCAATTGTTGAAAGAATGAATAATGGCCTTG
Seq A exon
GTAAGTGTACATATGCACATTTGTGCATGTATGCCCATGCATGTGTATGCATATGCATGCATGTGTATACATGTGTATGCTGAGCAGGGATCATAGGGACTAGAAAGGAAAAGCTCCTTAGGTAGTGTCTTAGGGTTTTACTGCTGTGAACAGACACTATAACCAAGGTTAACTCATAAGAACAACACTTAATTGGGGCTGGTTTACAGGTTCTGAGGTTCAGTCCATTATCAAGGTGGGAGGAGGGCAATGTCCAGGCAGGCATGATACAGGGGCAGCTGAGAATTCTACCTCTTTGTTTAAAGGCCATTAGGAAAAACTGACTTCCAGGCAGCTAGGATGAGGGTCTTAAAGCCCACACCCACAATGACATACTTCCTTCAACAAGGCCACACCTACTCCAACAATGCCATACCTCCAAAGAGTGCCACTCCTGGGCCCAGCATATTCAAACCACCACAGGCAGGGAGTCAAGTGACATTCAGGGTCTTGGTTTCTTCCTTGTGTGGGGTCTCCCTCCTAGCTTCCATTTCCTGTTCTGGTAG
Seq C2 exon
GGGTCATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCATTTCTCACTTATGACCTTGAGAAATTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCCTCCTGTCTTGTGGAAGAGCTAAGAAAAACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013241:ENSRNOT00000054729:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAAAATTTATGGCCCTGTGT
R:
TTTGTTTTTCTTAGCTCTTCCACA
Band lengths:
310-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]