HsaINT0044262 @ hg38
Intron Retention
Gene
ENSG00000138115 | CYP2C8
Description
cytochrome P450 family 2 subfamily C member 8 [Source:HGNC Symbol;Acc:HGNC:2622]
Coordinates
chr10:95067208-95067691:-
Coord C1 exon
chr10:95067529-95067691
Coord A exon
chr10:95067358-95067528
Coord C2 exon
chr10:95067208-95067357
Length
171 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
TCTGCCCCTTTTTTTATTAGGAA
3' ss Score
10.07
Exon sequences
Seq C1 exon
TTCTCAAAAGTCTATGGTCCTGTGTTCACCGTGTATTTTGGCATGAATCCCATAGTGGTGTTTCATGGATATGAGGCAGTGAAGGAAGCCCTGATTGATAATGGAGAGGAGTTTTCTGGAAGAGGCAATTCCCCAATATCTCAAAGAATTACTAAAGGACTTG
Seq A exon
GTAGGTGCACATATTTCTGTGTCAGCTTTGGTAACTGGGGTGAGGGGGATGGAAAACAGAGCCCTAAAAAGCTTCTCAGCAGAGCTTAGCCTATCTGCATGGCTGCCAAGTGTTGCAGCACTTTCTTCCTTGGCTGTGAATTCTCCCAGTTTCTGCCCCTTTTTTTATTAG
Seq C2 exon
GAATCATTTCCAGCAATGGAAAGAGATGGAAGGAGATCCGGCGTTTCTCCCTCACAACCTTGCGGAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCTCACTGCCTTGTGGAGGAGTTGAGAAAAACCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138115:ENST00000371270:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(23.1=75.0)
A:
NA
C2:
PF0006717=p450=PU(19.2=73.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTGTGTTCACCGTGTA
R:
ACGGTCCTCAATGCTCCTCTT
Band lengths:
250-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development