BtaINT0004436 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MEU8]
Coordinates
chr26:16132281-16132779:+
Coord C1 exon
chr26:16132281-16132443
Coord A exon
chr26:16132444-16132629
Coord C2 exon
chr26:16132630-16132779
Length
186 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TCTGTTTCCCCTGCTGGTAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
CTCTCAAAAGTCTACGGCCCTGTGTTCACTCTGTATTTTGGCATGAACCCCCTGGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCTCTGATCGGCCTGGGAGAGGAGTTTTCTGGAAGAGGCAGTTGCCCAGTGATTCAAAGAGCTTCTAAGGGATATG
Seq A exon
GTAGGTGTGTATGTGTGGGTGTTCAGCATTGGTAAATGGTAGGAGTGGGGAGGATGGAAAAGGAAATTTGACAACTGTCTGCCATGGCTCCTCAGCAGATCGTGTTCCCTCTCTGAGGCTGCCATGTGTCAGCTCACTCCTCCTTCCCTAGAACTTGCTCCTAGTTTCTGTTTCCCCTGCTGGTAG
Seq C2 exon
GAGTCATTTTCAGCAATGGGAAGATATGGAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGGATTTCGGGATGGGGAAGAGGAGCATGGAGGACCGTGTTCAACAGGAAGCGTGCTGCCTGGTGGAGGAGTTGAGAAAAACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020375:ENSBTAT00000008918:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTACGGCCCTGTGTTCA
R:
CTCCTCTTCCCCATCCCGAAA
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]