MmuINT0044839 @ mm9
Intron Retention
Gene
ENSMUSG00000042248 | Cyp2c37
Description
cytochrome P450, family 2. subfamily c, polypeptide 37 [Source:MGI Symbol;Acc:MGI:1306806]
Coordinates
chr19:40068215-40068690:+
Coord C1 exon
chr19:40068215-40068377
Coord A exon
chr19:40068378-40068540
Coord C2 exon
chr19:40068541-40068690
Length
163 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GAGTGTTCTTATTTCTTTAGGCC
3' ss Score
8.09
Exon sequences
Seq C1 exon
TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG
Seq A exon
GTAAGTATACATGTACTGCATAGTATGCATAGTGAGCTAAAGGATGGAGAGCAGAGGCCAACTCTGCTCCTGAGGCACAGTTTGGGATTCTATGGCTACAACCAGGCATCTCATTCTTCTGTCTCCAGGATGTACTCTCTACTGAGTGTTCTTATTTCTTTAG
Seq C2 exon
GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042248-Cyp2c37:NM_010001:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTGGTGTTGCATGGAT
R:
AAGTTCCTCCACAAGGCAACG
Band lengths:
251-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: