BtaINT0005477 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8559086-8560331:+
Coord C1 exon
chr7:8559086-8559207
Coord A exon
chr7:8559208-8560060
Coord C2 exon
chr7:8560061-8560331
Length
853 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTCGTGCTCTCATTCTACAGGAA
3' ss Score
11
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCACCTGATCAAAGAGGGCCACACCCATCTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGCATCTTCAGTTACGACAGCAATTGCCAGGA
Seq A exon
GTGAGTCTCAGCCCAGGGCCTGGGAATGTAGACCCACTAGAGTAGATGAGGGAGGGAGGGTAATCAGAAGAGTCTTCCTGGAGGAGGTGAGTCAGAGCTGGACATTGAAGGACAGAGAAGGGAAAGAGAAGGAGCTATTCCTGCAAGTAGGTAGAACAGTTTGATAAAGGGCAGGAGGTTATAATGAACAAAGTGTGTGCAATAGTGATGAGACACTTCGGAAATAAGGTTGGAGAAGTGAGCAGGTTATATCTTAAGGGCATTTGAAGCCAGACAAAGAGGATATGAACTTTATCCTGAGGTTTCCAGGAAGCTATGAAAAGTGCTTCAGAAGATGAGAGTCATGGTCAAATCTGAACTCTAACATCTGACTCAAGAGAAGACTGACCATAATGTAGACCCTGGATGGTGTTGACAATGGATCTAAGAATAGGGAAGTGAATGAAAGTGAAAGTGAAGTCGCTCAGTCATGTCTGGTTCTTTGTGACCCCATGGACTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTAGGGTGCCATTTCCTTCTCCAATTGACCTTCTAGCAGAAGATCTGAGCTGAGTGGACAGTTTTGGAGAAAAAGGGCAGATACTGGGTAAGAGAGAGAGGAGAAGCTGTGCTCTGGCTGCCTGGGGTATGGAGGCAGCTCACAGAGATGGGAAGTGGATTGAAAGAGTCTGGAGCATGACTCTCGTGGCTCATCACCATACTGGATCTATGGGCCCACCTGTTCTTGGAGCCTCAGTTTCCTGAAGGGAGGTAGCCTTCGGTTTCTGAGTTTCAGGTGTTTTAAGTTCTTGCATCCCTTCGTGCTCTCATTCTACAG
Seq C2 exon
GAAGCCCAGTGAATATATTGCTGCCATCTTGGAGCTCAGTGCCCTTGTTGCAAAACGACACCAGGAGATTTTTTTGCACATGGACTTCCTGTACTACCTCACCCCAGATGGGCGGCGCTTCCGCAGGGCCTGCCGCCTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCACCGCACCCTCCCCAGTGAGAGTATTGATGACTTCCTCAAGGCCAAAGCGAAGACCAAGACTTTAGACTTCATTGATGTGCTCCTGTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748:ENSBTAT00000036366:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCAAAGAGGGCCACACC
R:
AGTCTTGGTCTTCGCTTTGGC
Band lengths:
345-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]