HsaINT0044518 @ hg19
Intron Retention
Gene
ENSG00000228314 | CYP4F3
Description
cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene [Source:HGNC Symbol;Acc:2647]
Coordinates
chr19:15759970-15760993:+
Coord C1 exon
chr19:15759970-15760091
Coord A exon
chr19:15760092-15760722
Coord C2 exon
chr19:15760723-15760993
Length
631 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TTTCTGCCCTTATCCTGCAGGAA
3' ss Score
12.67
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGCCCGTCTGGACATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTGCAGAAATGTGTCTTCAGCTTTGACAGCCATTGCCAGGA
Seq A exon
GTAAGTTCTTGCCCAGGGTCTGGGATCCTGGGCCGTGGACACAAAGTTGGTAGGTGGGGGGCTGGGGAGGACTGAGCAGGGAAATCAGACAAACCTTCTTGGAGGAGTTGTTATACCTGATCGTTGAAGGACTGGTATGAATTTTATCTTGAGGTTTCCAGGGACTCATTAAAAGGGTTTGAACTGGTGGGTGTGGTCAAAGTGGGTCTCTCTCAGGGACTGACTGTAATGTAGCACTAAATGGAGTTAACACTGATGCAAAGAAGCTAGGGTGGAAGCTGGACCATGGACCAGTTGGAAGAGGATAAAGTCTGAGCTTTGTGGACAGCTTCAGGAAGGAGAAGGGGCAAGACTGTATACTGGGAGGGAGAGAGGGAATAGGAGCATAATGTGCAAACTATCCTCTGGGTGCCTAGCTGCATGGAGGCATCTCACAGAGATGGGATGCAGGGAGAGATAAGAGAGCCTGGAGAGTCGATTTCATGCTGATCCCCATCCTGCATCTGAGGGGCCATCTGTTCCTGGATACCCCGTTTACTGATAGGAGGTAGCTCCTAGCTGCTGGTGGGAGGTGATCCTGGGGCTTCAGGTGTATTAAATTGTTGCCTCCCTTTCTGCCCTTATCCTGCAG
Seq C2 exon
GAAGCCCAGTGAATATATTGCCGCCATCTTGGAGCTCAGTGCCCTTGTGACAAAAAGACACCAGCAGATCCTCCTGTACATAGACTTCCTGTATTATCTCACCCCTGATGGGCAGCGTTTCCGCAGGGCCTGCCGCCTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACCCTCCCTAGCCAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAATCCAAGACTTTGGACTTCATTGATGTACTCCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228314-CYP4F3:NM_000896:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCCTCAGAGGGTAG
R:
GTCTTGGATTTGGCCTTGGCT
Band lengths:
347-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)