BtaINT0046294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015735 | CYP4F2
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075322]
Coordinates
chr7:8438630-8439803:-
Coord C1 exon
chr7:8439682-8439803
Coord A exon
chr7:8438901-8439681
Coord C2 exon
chr7:8438630-8438900
Length
781 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CCTTATGCTCTCTTCCTCAGGAA
3' ss Score
10.92
Exon sequences
Seq C1 exon
GCCAAGTGGGAGCACCTGATCACAGAGGGCCACACCCATCTGGACATGTTTGAACACATCAGCCTCCTGACCCTGGACAATCTGCAGAAATGTGTCTTCAGTTTTGACAGCAATTGCCAAGA
Seq A exon
GTGAGTTTCATCGCTGGGCCTGGGAACATGAGTCATAGACTCAAGGAAATAGATGGGGGAGGGAGGACTGAGCAGGGCAATTGGAAGGGCCTTCCTGGAGGACGTGGCTCAGAGACGGACAACCCAGGACAGGAAATGCAAAGAGAAGGAGCTATCCTTCCTGGTAGGTAGAATCCTTTGATAAATGCAAGGAGGGTAGGATGAGAAAAGTATGCGCAACTGTGAGGAGACACCACGAAAAAAAGGTTGGAGGAATGAGAAGGTAATATCTTAAGGGAATTCTGAAGTCAGGCTAAGAAGATATGAACTTTATTTGAGGTTTCCTGGAAGCTATGGAAGGTGTTTGAGCACATGAAGGTCTTGGTTAAAGTTGAGCTTGGACATCCGACTCAAGAGAATCCAATAGTCATTTAGACACTGGATGCTGTTGACACTGGATGTAAGGAGACTAAGGAAGGGGCTAGGCCATTGACCAGCTGGGAAAGGATAAGGGCTGAGACAAGTGGACAGTATGGAGAAGGAGAAGGGGGAGATACTGGGTGAGAGAGAAAGGAGAGAAGCATGGTATCTAAGCTATGCTCTGGGTGCCTGGGGCATGGAGGCAGCTCACTGAGATAGGATGTGGGTTGAGAAGAGTCTGAAGAGTCACATCTTCTGGCTCATCCCCACGCTGTATCTATGGGTTATTTGTTCTTGGAGCCTCAATTCCTGAAGGGAGGTAGATCCTAGCTTCTGGGCTTCAGGTTTTAAGTTGTTGCCTCCCTTATGCTCTCTTCCTCAG
Seq C2 exon
GAAGCCCAGTGAATATATCGCCGCCATCTTGGAGCTTAGTGCGCTTGTGTCAAAAAGAAACCAACAACTCTTCCTGTATATGGACTTCCTGTACTATCTCACCTCAGACGGGCAGCGCTTCCGCAATGCCTGCCGCCTAGTGCACGACTTCACAGATGCCGTCATTCAGGAGCGGCGCCGCACTCTCCCCAAGGAGAATATTGATGACTTCCTCAAGGCCAAGGCGAAGACCAAGACTTTGGACTTCATTGATGTGCTTCTGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015735:ENSBTAT00000020890:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGGAGCACCTGATCACA
R:
AAGTCTTGGTCTTCGCCTTGG
Band lengths:
358-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]