RnoINT0044608 @ rn6
Intron Retention
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14873394-14874856:+
Coord C1 exon
chr7:14873394-14873515
Coord A exon
chr7:14873516-14874585
Coord C2 exon
chr7:14874586-14874856
Length
1070 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TTCACGTTCTCACTGCGCAGGAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GCCAAGTGGCTGCGCCTGGCCTCAGGGGGTAGCGCCCATCTGGACATGTTTGAGAACATCAGCCTCATGACCTTGGATACTTTGCAGAAATGTGTCTTCAGCTTCAACAGCAACTGTCAGGA
Seq A exon
GTAAGTTTCAACTTCAGGCCTTGGAATCTGGTCCACAGACTCAAGGCAAGAGGTTGAGGAGGGAAGGTTGGCCAGAGTAAGCAGAAGAGACTCTATGGAGGAAGTGGTTCAGAACTGACACTGAACCAACCCCATGGGGGATAGAGTAGTCCCTCCTGTAAGGTGGAATAATTTAGAAAAAGTCAAAGAGATTCAGATGAGACAGATCATGGGCATCTGACATGGGGCATTTTGGAAGGAAGTTGGGAGAACAGACAGAAATTAAAGCATACAGTCAATGAAAGTCAAAAAAAGTGTGGAACTTCATTCTGTGAATTAAGGTTGTGGTGTCTAAGAAACTATGAGATGTCTTCATTATCTGTCTCTCTCATTGTAACAAAGTATCTAAGGTTATCAAATAGAGGATATATTCATTTCAGCTTATGGTTTCAGTGTAATTTGGATCTGTCCCCAAAGTTGTATCATGGAGGGGACCATGTGTTGGAGGAAACACAGGCAGCTAAGAAGCAAAGAGGGACAGAAAATGCCAGGGTTTTAACACCCCTTTAAAGGCACACTCATAATACAGAAGAGATCTGTAAACAGTGACTGCCTTTTAAAAGAAAATAGAGTTGGTGTTGTACAAAGGGGTATGTAGATGAGTCTGGCCATAGAAAATGGCAAGAACTGGTGAGTTTTCATCTGGGTGAACAGCATTGGCAGTGGGAGGGGTAGAACTGGACCCTGTGTTAGAAAGGTGTCTCCACTCTGCAGTGGTAGATGCTTAGGGAAACGCATTGGCTCATGGGAAGCAATGAAGGGAAAGAAGGAACTGAGTATTCAGGGCTTGGATTACATATGCAACAAGATTCCCTATGTAACAAGCCCTTTTGGCTCGAGATGGCTCTTTTGAGATTTGTCTTACTATGTTGCCATCAAGGCCCATGGCTATCATGTGTTGCCATGATCTCTAGATGAGTTGGGCTACTTGGCATCCTGTTAGGAAATAGTCCCCTCTTTCTGCTGAGAGATGCCCCCTGGGGTTTTAGGTCTGTCTTATTCCTTGTTTTCTTCACGTTCTCACTGCGCAG
Seq C2 exon
GAAGCCCAGTGAGTACATTGCCGCCATCTTAGAACTCAGTGCACTGGTCGTGAAAAGAAACGAACAGCTGCTTCTGCACATGGACCTGCTCTACCGCCTCACACCTGATGGAAGGCGCTTCTACAAGGCCTGCCACCTGGTGCATGACTTCACCTATGCCGTCATCCAGGAGCGACGTCGCACTCTGCCCAAGCATGGTGGTGATGATGTCATCAAGGCCAAAGCCAAGTCCAAGACTCTGGACTTCATTGATGTACTGCTACTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344:ENSRNOT00000066654:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTCAGGGGGTAGC
R:
AGTCTTGGACTTGGCTTTGGC
Band lengths:
345-1415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]