GgaINT0035773 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20787283-20787641:+
Coord C1 exon
chr8:20787283-20787395
Coord A exon
chr8:20787396-20787489
Coord C2 exon
chr8:20787490-20787641
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CTGACCTCGACCTCTTACAGCAA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GATAAATGGGAGAAGAAGAAGTCAGTAGAGCTCTTCGAAGACGTCAGCCTGATGGCGCTGGACAGCATCATGAAATGCGCCTTCAGCTACAACGCCAACTGCCAGACTCAGAG
Seq A exon
GTCAGCACAAAAACTTCCCAACCCTGGGACAGCGAGTGCCCCTGTTTAATCTACTTGCACTGCTAACACACACTCTGACCTCGACCTCTTACAG
Seq C2 exon
CAACTCAGACACTTACATCAAAGCCGTTTTCGACCTGGGCTACCTCATAAACAAGAGAATACAGAATTTCTCCTACCAAGATGCCTTCTATGACCTGACTCACAGCAGCCGGGAGTTTCAGGATGCCTGCAGGCGGGCCCATGCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAATGCGCCTTCAGCT
R:
CATCCTGAAACTCCCGGCTG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]