BtaINT0046334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99687251-99687618:-
Coord C1 exon
chr3:99687491-99687618
Coord A exon
chr3:99687406-99687490
Coord C2 exon
chr3:99687251-99687405
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATCTCCACTCCCTCTTCTAGCTC
3' ss Score
9.1
Exon sequences
Seq C1 exon
AATAAGTGGGAGAAGATTTGTGGCTCTCAGAATACACTTCTGGATATCTATGAGCACATCAACTTGATGACCCTGGACGTACTCATGAAATGTATTTTCAGCTGGGAAACCAACTGCCAAACAGACAG
Seq A exon
GTCAGTTACAGGAGGGGTAAACAAAAAACTTCATTTGCATTATCTAAGCCGTTTATTGACATATTATCTCCACTCCCTCTTCTAG
Seq C2 exon
CTCCCATGATAATTATGTAAAAGCAACAAGTGAAGGCAGCAATATCCTTATGCAACGCCTGTTCAATTACTTTTATCACTATGACCTAATTTTCAAATTAAGTCCTCTGGGCCACCGCCTGCGGGAGGTAAACAAGATATTGCATCATCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647:ENSBTAT00000020783:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.6=100)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTGGACGTACTCATGA
R:
CGGTGGCCCAGAGGACTTAAT
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]