HsaINT0044550 @ hg19
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47501478-47501843:+
Coord C1 exon
chr1:47501478-47501605
Coord A exon
chr1:47501606-47501688
Coord C2 exon
chr1:47501689-47501843
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATCCCAACTTTCTCTTCTAGCAC
3' ss Score
8.99
Exon sequences
Seq C1 exon
GATAAGTGGGAGAAGATTTGCAGCACTCAGGACACAAGCGTGGAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAATCATGAAATGCGCTTTCAGCAAGGAGACCAACTGCCAGACAAACAG
Seq A exon
GTCAGTGGTGGGAGAGCAAAAAAGATATTTCTTCACATTTTCTAAGTTGTTTATTAACACATTATCCCAACTTTCTCTTCTAG
Seq C2 exon
CACCCATGATCCTTATGCAAAAGCCATATTTGAACTCAGCAAAATCATATTTCACCGCTTGTACAGTTTGTTGTATCACAGTGACATAATTTTCAAACTCAGCCCTCAGGGCTACCGCTTCCAGAAGTTAAGCCGAGTGTTGAATCAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-CYP4X1:NM_178033:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCGCTTTCAGCAAGGAGA
R:
TCGGCTTAACTTCTGGAAGCG
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)