RnoINT0044642 @ rn6
Intron Retention
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133942087-133942446:-
Coord C1 exon
chr5:133942319-133942446
Coord A exon
chr5:133942242-133942318
Coord C2 exon
chr5:133942087-133942241
Length
77 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
GTTCCACATTTTTCTTCCAGCAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GATAAATGGGAGAAGACGTGGACCACGCAGGAAACAACCATCGAGGTTTTTGAACACATTAACTTGATGACCCTGGACATAATAATGAAATGTGCTTTTGGCCAGGAGACCAACTGCCAGATAAACGG
Seq A exon
GTCAGTGATGGGACAGTAAATAGGTTCACTGTGATCTGAGTCAACCATTAACCCACGGTTCCACATTTTTCTTCCAG
Seq C2 exon
CACCTATGAGTCTTATGTGAAGGCAACATTTGAACTTGGTGAAATCATATCTTCTCGCTTGTACAATTTCTGGCATCATCATGACATAATTTTCAAACTCAGTCCTAAGGGCCACTGCTTCCAGGAGTTAGGCAAAGTGATACATCAATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513:ENSRNOT00000011985:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.6=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTTTTGGCCAGGAGAC
R:
TGCCTAACTCCTGGAAGCAGT
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]