GgaINT0035773 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22609294-22609652:+
Coord C1 exon
chr8:22609294-22609406
Coord A exon
chr8:22609407-22609500
Coord C2 exon
chr8:22609501-22609652
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CTGACCTCGACCTCTTACAGCAA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GATAAATGGGAGAAGAAGAAGTCAGTAGAGCTCTTCGAAGACGTCAGCCTGATGGCGCTGGACAGCATCATGAAATGCGCCTTCAGCTACAACGCCAACTGCCAGACTCAGAG
Seq A exon
GTCAGCACAAAAACTTCCCAACCCTGGGACAGCGAGTGCCCCTGTTTAATCTACTTGCACTGCTAACACACACTCTGACCTCGACCTCTTACAG
Seq C2 exon
CAACTCAGACACTTACATCAAAGCCGTTTTCGACCTGGGCTACCTCATAAACAAGAGAATACAGAATTTCTCCTACCAAGATGCCTTCTATGACCTGACTCACAGCAGCCGGGAGTTTCAGGATGCCTGCAGGCGGGCCCATGCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.2=100)
A:
NA
C2:
PF0006717=p450=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAATGCGCCTTCAGCT
R:
CATCCTGAAACTCCCGGCTG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]