HsaINT0044437 @ hg19
Intron Retention
Gene
ENSG00000162365 | CYP4A22
Description
cytochrome P450, family 4, subfamily A, polypeptide 22 [Source:HGNC Symbol;Acc:20575]
Coordinates
chr1:47608941-47609588:+
Coord C1 exon
chr1:47608941-47609065
Coord A exon
chr1:47609066-47609433
Coord C2 exon
chr1:47609434-47609588
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTCTTCATACTCTCCCTCAGGAA
3' ss Score
9.61
Exon sequences
Seq C1 exon
GACAAATGGGAAGAGCTCCTTGGCCAGGATTCCCCTCTGGAGGTCTTTCAGCACGTCTCCTTGATGACCCTGGACACCATCATGAAGAGTGCCTTCAGCCATCAGGGCAGCATCCAGGTGGACAG
Seq A exon
GTCAGTGACAACCCTCCAGCTGCAGGGCCCTTGTTCTTATCAAGTGGAGTGCACATACCTGAGGGGCAGGTGGGGCAGCGTGAAGGCTCACCGCCACACAAAGGAAGAGTCAGTCCCTGACCAAACTCTAATTCCTGTCCAGACCAAACAAAGTCTCAGGAACAGATGCCTAATTCCTAGCACAGGTGGACCCTGGATGTTCATACCATCTGATAAAGGCCAAAGGATAATAGGGCTGTAAGATAGAAGAAACATTGCCTCAAGGCTGCTTGTCCCCATTATCCGAGGCTGCCTCCTCTCAGACCCCATTCTACTTCCGGGTAATGGGCCCACCCCTACTGCGGTCTCTTCTTCATACTCTCCCTCAG
Seq C2 exon
GAATTCTCAGTCCTACATCCAGGCCATTAGTGACCTGAACAGCCTGGTTTTTTGCTGTATGAGGAATGCCTTTCATGAGAATGACACCATCTACAGCCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162365-CYP4A22:NM_001010969:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGGGAAGAGCTCCTTGG
R:
CTGTGTGCTGATGGGCCAG
Band lengths:
279-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)