MmuINT0045263 @ mm9
Intron Retention
Gene
ENSMUSG00000066072 | Cyp4a10
Description
cytochrome P450, family 4, subfamily a, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88611]
Coordinates
chr4:115196853-115197484:+
Coord C1 exon
chr4:115196853-115196977
Coord A exon
chr4:115196978-115197329
Coord C2 exon
chr4:115197330-115197484
Length
352 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCTTTATCTTCTTCTTCAGAAA
3' ss Score
10.34
Exon sequences
Seq C1 exon
GACAAATGGGAACGGCTGGCTGATCAGGACTCCTCTATAGAGATCTTTCAACACATCTCCTTAATGACCCTAGACACTGTCATGAAATGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTAGATGG
Seq A exon
GTGAGTGACAAGCCTTGAACTTCACGGCCTTTGTCTTACCAACTGATATGGACTATTCTGTGATGCAAGTGGGACATCTAGAATACCCAATAGAGAGTATTACCCCAGCCTCTGTTCAATCTCTGACCCAATCCAATCTTAAATCTACCATAGACCACTGATCCCTAGCTGGGGTAGATGCCTAGACACTCATGCCACCTTTTACTGACTTGAAATTTACAAGGGTTATAAGACAGAGTTAATGTGTTCCTCAATGTTGTCTGTTCCTACCATATAGAAATCTCCCAGAGTCCATTCTATCTATGGATCAAATATCTCTACAGTTTAATATGTTCTTTATCTTCTTCTTCAG
Seq C2 exon
AAATTACAGGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTATTTCACTCCCGTGTGAGGAATATCTTTCATCAGAATGATACCATCTACAAACTTTCTTCCAATGGCCGCTTGGCCAAACAAGCTTGTCAACTTGCCCATGATCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066072-Cyp4a10:NM_010011:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAATGGGAACGGCTGGC
R:
TGTGTGATCATGGGCAAGTTGA
Band lengths:
279-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: