HsaINT0044426 @ hg19
Intron Retention
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450, family 4, subfamily A, polypeptide 11 [Source:HGNC Symbol;Acc:2642]
Coordinates
chr1:47400672-47401319:-
Coord C1 exon
chr1:47401195-47401319
Coord A exon
chr1:47400827-47401194
Coord C2 exon
chr1:47400672-47400826
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTCTTCATACTCTCCCTCAGGAA
3' ss Score
9.61
Exon sequences
Seq C1 exon
GACAAATGGGAAGAGCTCCTTGGCCAGGATTCCCCTCTGGAGGTCTTTCAGCACGTCTCCTTGATGACCCTGGACACCATCATGAAGTGTGCCTTCAGCCATCAGGGCAGCATCCAGGTGGACAG
Seq A exon
GTCAGTGACAACCCTCCAGCTGCAGGGCCCTTGTTCTTATCAAGTGGAGTGCACATACCTGAGGGGCAGGTGGGGCAGCGTGAAGGCTCACCGCCACACAAAGGAAGAGTCAGTCCCTGACCAAACTCTAATTCCAGTCCAGACCAAACAAAGTCTCAGGAACAGATGCCTAATTCCTAGCACAGGTGGACCCTGGATGTTCATACCATCTGATAAAGGCCAAAGGATAATAGGGCTGTAAGATAGAAGAAACATTGCCTCAAGGCTGCTTGTCCCCATTATCCGAGGCTGCCTCCTCTCAGACCCCATTCTACTTCCGGGTAATGGGCCCACCCCTACTGCAGTCCCTTCTTCATACTCTCCCTCAG
Seq C2 exon
GAATTCTCAGTCCTACATACAGGCCATTAGTGACCTGAACAACCTGGTTTTTTCCCGTGTGAGGAATGCCTTTCACCAGAATGACACCATCTACAGCCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-CYP4A11:NM_000778:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGGGAAGAGCTCCTTGG
R:
CTGTGTGCTGATGGGCCAG
Band lengths:
279-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)