MmuINT0045330 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115242314-115242945:+
Coord C1 exon
chr4:115242314-115242438
Coord A exon
chr4:115242439-115242790
Coord C2 exon
chr4:115242791-115242945
Length
352 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCTTTATCTTCTTCTTCAGAAA
3' ss Score
10.34
Exon sequences
Seq C1 exon
GACAAATGGGAACGGCTGGCTGGTCAGGACTCCTCTATAGAGATCTTTCAACACATCTCTTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTAGATGG
Seq A exon
GTGAGTGACAAGCCTTGAACTTCACGGCCTTTGTCTTACCAACTGATATGGACTTCACTGTGATGCATGTGGGACATCTAGGATACTCAATAAAAAGTATTACCCCAGCCTCCATTCAATCTCTGATCCAATCCAATGTAAACTCAACAATAGACCACTGATCCCTAGCTGGGGTAGATGCCTAGTCACTCATGCCACCTTTTACTGACTTGAAATTTACAAGGGTTATAAGACAGAGTTAGTGTGTTTCTCAACGTTATCTATTCCTACCATATAGAAATCTCCCAGAGTCCATTCTATCTGCGGGTCAAATCTCTCTACAGTCTAATCTGTTCTTTATCTTCTTCTTCAG
Seq C2 exon
AAATTACAAGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTAGTTCACTCTCGTGTGAGGAATATGTTTCATCAGAATGATACTATCTACAAACTTTCTTCCAATGGCCGCTTGTCCAACCAAGCTTGTCAACTTGCCCATGATCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAATGGGAACGGCTGGC
R:
TGTGTGATCATGGGCAAGTTGA
Band lengths:
279-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: