HsaINT0044448 @ hg38
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46813482-46814063:+
Coord C1 exon
chr1:46813482-46813606
Coord A exon
chr1:46813607-46813911
Coord C2 exon
chr1:46813912-46814063
Length
305 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TCCTACCCTCTGCTTAGCAGGGA
3' ss Score
4.95
Exon sequences
Seq C1 exon
GACAAGTGGGAAGAGAAAGCTCGGGAGGGTAAGTCCTTTGACATCTTCTGCGATGTGGGTCACATGGCGCTGAACACACTCATGAAGTGCACCTTTGGAAGAGGAGACACCGGCCTGGGCCACAG
Seq A exon
GTCAGGAGCCACCTCGGGGCTGACCGCACTGTCTCCAAAGCCATCTTAGAGGGGAGAGTTGGCAGGGGTCCTGGGCTCTGATCTGAGAAGAGATAGGGTCCTGCCCCAGGGAGCCTTAGCTTGCGGGGAGACAGGACCTGCTCATGGTGGGGTAAACACCTGGCTTTAGCAAGGAGGCTTAAGGGCAGGGAGAAGAAGAGCAGGATGCTCTGTGGTTGGGGCTAGATTCCTGGAATGGAGTTTCTCTGGCTCTGCTCCTGGGCCAGTGTCTAAGCCAATCCCTCCTCCTACCCTCTGCTTAGCAG
Seq C2 exon
GGACAGCAGCTACTACCTTGCAGTCAGCGATCTCACTCTGTTGATGCAGCAGCGCCTTGTGTCCTTCCAGTACCATAATGACTTCATCTACTGGCTCACCCCACATGGCCGCCGCTTCCTGCGGGCCTGCCAGGTGGCCCATGACCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973:ENST00000271153:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(25.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGAGAAAGCTCGGGAG
R:
CTGTATGGTCATGGGCCACCT
Band lengths:
271-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development